Summary of Gene (AT5G10380.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G10380.1 5'->3' (+) Promoter sequence AT5G10400.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 28 | + | 3267706 | -113 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 3266846 | -973 |
TSS clone | T | clone | + | 3267636 | -183 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GCCTTTAA | + | 3267480 | 3267487 | -339 | -332 | |||
AtREG639 | GCCTTTAA | PPDB Motif | AAACG(C/G)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 4 | - | 3270952 | AT5G10400.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | C | clone | - | 3270954 | AT5G10400.1 |
TSS clone | A | clone | - | 3270952 | AT5G10400.1 |
TSS clone | T | clone | - | 3270951 | AT5G10400.1 |
TSS clone | A | clone | - | 3270948 | AT5G10400.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TATAAAAA | - | 3270979 | 3270986 | AT5G10400.1 | |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CTTATTGG | - | 3271092 | 3271099 | AT5G10400.1 | ||||
AtREG611 | CTTATTGG | PPDB Motif |   | PLACE Motif |   | ||||
REG | ATGACGTGGAT | - | 3271115 | 3271125 | AT5G10400.1 | ||||
AtREG483 | ATGACGTG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | ||||
AtREG419 | TGACGTGG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA  | ||||
AtREG547 | ACGTGGAT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
REG | AACGACGA | + | 3271691 | 3271698 | AT5G10410.1 | ||||
AtREG648 | AACGACGA | PPDB Motif |   | PLACE Motif |   |