PlantPromoterDB promoter information of AT5G10450

Summary of Gene (AT5G10450)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G10450 TAIR NCBI
Gene model	AT5G10450
Description	Encodes a member of the 14-3-3 gene family that is a lambda isoform (14-3-3λ). Interacts with APX3 (ascorbate peroxidase) and AKR2 , suggesting a role in mediating oxidative metabolism in stress response. This protein was shown to colocalize and interact with SERK1 by which it is phosphorylated. This protein is also reported to interact with the phosphorylated form of the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1.

#

Overview

Focused view (chromosome 5: 3287261-3286062)

`Genome position from initiation codon` `AT5G10450.1 AT5G10450.2 TSS from cDNA TSS information AT5G10450 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G10450

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 60 - 3286313 -52

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	60	-	3286313	-52

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone - 3286347 -86

TSS clone T clone - 3286321 -60

TSS clone C clone - 3286317 -56

TSS clone T clone - 3286316 -55

TSS clone A clone - 3286313 -52

TSS clone A clone - 3286312 -51

TSS clone A clone - 3286311 -50

TSS clone T clone - 3286301 -40

TSS clone A clone - 3286290 -29

TSS clone A clone - 3286283 -22

TSS clone T clone - 3286267 -6

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	-	3286347	-86
TSS clone	`T`	clone	-	3286321	-60
TSS clone	`C`	clone	-	3286317	-56
TSS clone	`T`	clone	-	3286316	-55
TSS clone	`A`	clone	-	3286313	-52
TSS clone	`A`	clone	-	3286312	-51
TSS clone	`A`	clone	-	3286311	-50
TSS clone	`T`	clone	-	3286301	-40
TSS clone	`A`	clone	-	3286290	-29
TSS clone	`A`	clone	-	3286283	-22
TSS clone	`T`	clone	-	3286267	-6

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTCTCTCTTTCTCTCTC - 3286264 3286281 -3 -20

Y Patch TTCTTCTTCTCTCTTTCTCTTTC - 3286325 3286347 -64 -86

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTCTCTCTTTCTCTCTC`	-	3286264	3286281	-3	-20
Y Patch	`TTCTTCTTCTCTCTTTCTCTTTC`	-	3286325	3286347	-64	-86
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AATAGCCC - 3286368 3286375 -107 -114

AtREG584 AATAGCCC PPDB Motif GCCCA PLACE Motif

REG GGCCTAATAAAGGCCCAAT - 3286594 3286612 -333 -351

AtREG506 GGCCTAAT            PPDB Motif PLACE Motif

AtREG467        TAAAGGCC     PPDB Motif PLACE Motif

AtREG359         AAAGGCCC    PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353          AAGGCCCA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356           AGGCCCAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352            GGCCCAAT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AATAGCCC`		-	3286368	3286375	-107	-114
	AtREG584	`AATAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`GGCCTAATAAAGGCCCAAT`		-	3286594	3286612	-333	-351
	AtREG506	`GGCCTAAT`		PPDB Motif		PLACE Motif
	AtREG467	`TAAAGGCC`		PPDB Motif		PLACE Motif
	AtREG359	`AAAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG353	`AAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`AGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG352	`GGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None