PlantPromoterDB promoter information of AT5G10860
Summary of Gene (AT5G10860)
|
Overview
|
Focused view (chromosome 5: 3431142-3429943)
|
Genome position
from initiation codon AT5G10870.1 TSS from cDNA TSS information AT5G10860 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT5G10860
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | C | 8 | - | 3430470 | -328 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 3430474 | -332 |
| TSS clone | C | clone | - | 3430472 | -330 |
| TSS clone | C | clone | - | 3430470 | -328 |
| TSS clone | T | clone | - | 3430469 | -327 |
| TSS clone | A | clone | - | 3430436 | -294 |
| TSS clone | G | clone | - | 3430413 | -271 |
| TSS clone | T | clone | - | 3430389 | -247 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTTATATATT | - | 3430494 | 3430503 | -352 | -361 |
| Y Patch | TCTCTTCC | - | 3430424 | 3430431 | -282 | -289 |
| Y Patch | CTCTCTCT | - | 3430441 | 3430448 | -299 | -306 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTGGGCCTGT | - | 3430629 | 3430638 | -487 | -496 | |||
| AtREG482 | GTGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG370 | TGGGCCTG | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG433 | GGGCCTGT | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| REG | GTGGGCCTTAA | - | 3430647 | 3430657 | -505 | -515 | |||
| AtREG482 | GTGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG353 | TGGGCCTT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG351 | GGGCCTTA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG416 | GGCCTTAA | PPDB Motif | PLACE Motif | ||||||
| REG | ACGTCGTC | - | 3430699 | 3430706 | -557 | -564 | |||
| AtREG526 | ACGTCGTC | PPDB Motif | ACGT | PLACE Motif | ACGT | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||