PlantPromoterDB promoter information of AT5G11380.2
Summary of Gene (AT5G11380.2)
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Overview
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Focused view (chromosome 5: 3629172-3630371)
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Genome position
from initiation codon AT5G11380.1 TSS from cDNA TSS information AT5G11380.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G11380.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 3629998 | -174 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCTTCCTCTTCTTCTTCTTCTTCTCTCTTT | + | 3629967 | 3629997 | -205 | -175 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGTAATTA | + | 3629846 | 3629853 | -326 | -319 | |||
| AtREG646 | CGTAATTA | ABA | PPDB Motif | PLACE Motif | |||||
| REG | ATTAGGCCCAACT | + | 3629902 | 3629914 | -270 | -258 | |||
| AtREG506 | ATTAGGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG360 | TTAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG358 | TAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG356 | AGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG449 | GGCCCAAC | PPDB Motif | GCCCA, CCAACGG | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG607 | GCCCAACT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TAATTGGG | + | 3629921 | 3629928 | -251 | -244 | |||
| AtREG600 | TAATTGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TTATGGGCTTTAA | + | 3629933 | 3629945 | -239 | -227 | |||
| AtREG394 | TTATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG477 | TATGGGCT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG378 | ATGGGCTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG376 | TGGGCTTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG365 | GGGCTTTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG545 | GGCTTTAA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||