PlantPromoterDB promoter information of AT5G12140.1
Summary of Gene (AT5G12140.1)
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Overview
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Focused view (chromosome 5: 3923186-3921987)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G12140.1 5'->3' (-) Promoter sequence AT5G12130.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G12140.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 97 | - | 3923985 | -49 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 3923990 | -54 |
| TSS clone | A | clone | - | 3923989 | -53 |
| TSS clone | G | clone | - | 3923988 | -52 |
| TSS clone | T | clone | - | 3923986 | -50 |
| TSS clone | C | clone | - | 3923984 | -48 |
| TSS clone | A | clone | - | 3923982 | -46 |
| TSS clone | T | clone | - | 3923980 | -44 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TCTCTATATATAAC | - | 3924015 | 3924028 | -79 | -92 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAAACGCGCTT | - | 3924032 | 3924042 | -96 | -106 | |||
| AtREG566 | AAAACGCG | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| AtREG492 | ACGCGCTT | PPDB Motif | ACGCGC | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||