Summary of Gene (AT5G14040.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G14040.1 5'->3' (-) Promoter sequence AT5G14030.1
AT5G14030.2 AT5G14030.3 AT5G14030.4 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 254 | - | 4533070 | -105 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 4533070 | -105 |
TSS clone | T | clone | - | 4533069 | -104 |
TSS clone | T | clone | - | 4533068 | -103 |
TSS clone | G | clone | - | 4533067 | -102 |
TSS clone | G | clone | - | 4533066 | -101 |
TSS clone | T | clone | - | 4533065 | -100 |
TSS clone | A | clone | - | 4533049 | -84 |
TSS clone | A | clone | - | 4533047 | -82 |
TSS clone | A | clone | - | 4533041 | -76 |
TSS clone | T | clone | - | 4532994 | -29 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CGTAATTA | - | 4533144 | 4533151 | -179 | -186 | |||
AtREG646 | CGTAATTA | ABA | PPDB Motif |   | PLACE Motif |   | |||
REG | AAAAAGCCCATGGGCCAA | - | 4533178 | 4533195 | -213 | -230 | |||
AtREG589 | AAAAAGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG409 | AAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG376 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | AAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG591 | CCCATGGG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
AtREG507 | GCCCATGGGC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
AtREG504 | CATGGGCC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG490 | ATGGGCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG484 | TGGGCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
REG | TTAATGGG | - | 4533218 | 4533225 | -253 | -260 | |||
AtREG396 | TTAATGGG | PPDB Motif | GCCCA  | PLACE Motif | TTAATGG  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 34 | + | 4526811 | AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 4526784 | AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4 |
TSS clone | T | clone | + | 4526787 | AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4 |
TSS clone | A | clone | + | 4526813 | AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4 |
TSS clone | G | clone | + | 4526814 | AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4 |
TSS clone | G | clone | + | 4526824 | AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4 |
TSS clone | T | clone | + | 4526825 | AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4 |
TSS clone peak | G | clone | - | 4525863 | AT5G14020.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GAATGGGCTTTTA | + | 4526690 | 4526702 | AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4 | ||||
AtREG643 | GAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG372 | AATGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | ATGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG376 | TGGGCTTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG409 | GGGCTTTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG549 | GGCTTTTA | PPDB Motif |   | PLACE Motif |   | ||||
REG | GTAGGCCCATTAT | + | 4526706 | 4526718 | AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4 | ||||
AtREG435 | GTAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG358 | TAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG354 | AGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG361 | GGCCCATT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG357 | GCCCATTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG546 | CCCATTAT | PPDB Motif |   | PLACE Motif |   | ||||
REG | CAATTGGGCCCATCATTGACTTT | + | 4526730 | 4526752 | AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4 | ||||
AtREG647 | CAATTGGG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG418 | AATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG352 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG392 | TTGGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG422 | TGGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG391 | GGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG403 | GGCCCATC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG635 | GCCCATCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG632 | TTGACTTT | PPDB Motif |   | PLACE Motif | TTGAC  | ||||
REG | TTAATGGG | + | 4526758 | 4526765 | AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4 | ||||
AtREG396 | TTAATGGG | PPDB Motif | GCCCA  | PLACE Motif | TTAATGG  |