PlantPromoterDB promoter information of AT5G14040.1

Summary of Gene (AT5G14040.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G14040 TAIR NCBI
Gene model	AT5G14040.1
Description	mitochondrial phosphate transporter; FUNCTIONS IN: binding; INVOLVED IN: transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial phosphate transporter, putative (TAIR:AT3G48850.1); Has 12348 Blast hits to 8451 proteins in 336 species: Archae - 0; Bacteria - 0; Metazoa - 6294; Fungi - 3202; Plants - 1869; Viruses - 3; Other Eukaryotes - 980 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 4527465-4526266)

`Genome position from initiation codon` `TSS from cDNA TSS information AT5G14040.1 5'->3' (-) Promoter sequence AT5G14030.1 AT5G14030.2 AT5G14030.3 AT5G14030.4 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G14040.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 254 - 4533070 -105

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	254	-	4533070	-105

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone - 4533070 -105

TSS clone T clone - 4533069 -104

TSS clone T clone - 4533068 -103

TSS clone G clone - 4533067 -102

TSS clone G clone - 4533066 -101

TSS clone T clone - 4533065 -100

TSS clone A clone - 4533049 -84

TSS clone A clone - 4533047 -82

TSS clone A clone - 4533041 -76

TSS clone T clone - 4532994 -29

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	-	4533070	-105
TSS clone	`T`	clone	-	4533069	-104
TSS clone	`T`	clone	-	4533068	-103
TSS clone	`G`	clone	-	4533067	-102
TSS clone	`G`	clone	-	4533066	-101
TSS clone	`T`	clone	-	4533065	-100
TSS clone	`A`	clone	-	4533049	-84
TSS clone	`A`	clone	-	4533047	-82
TSS clone	`A`	clone	-	4533041	-76
TSS clone	`T`	clone	-	4532994	-29

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG CGTAATTA - 4533144 4533151 -179 -186

AtREG646 CGTAATTA ABA PPDB Motif PLACE Motif

REG AAAAAGCCCATGGGCCAA - 4533178 4533195 -213 -230

AtREG589 AAAAAGCC           PPDB Motif PLACE Motif

AtREG409 AAAAGCCC          PPDB Motif GCCCA PLACE Motif

AtREG376   AAAGCCCA         PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378    AAGCCCAT        PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG591       CCCATGGG     PPDB Motif GCCCA, CCATGG PLACE Motif

AtREG507      GCCCATGGGC    PPDB Motif GCCCA, CCATGG PLACE Motif

AtREG504         CATGGGCC   PPDB Motif GCCCA, CCATGG PLACE Motif GGGCC, TGGGCY

AtREG490          ATGGGCCA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG484           TGGGCCAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG TTAATGGG - 4533218 4533225 -253 -260

AtREG396 TTAATGGG PPDB Motif GCCCA PLACE Motif TTAATGG

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`CGTAATTA`		-	4533144	4533151	-179	-186
	AtREG646	`CGTAATTA`	ABA	PPDB Motif		PLACE Motif
REG	`AAAAAGCCCATGGGCCAA`		-	4533178	4533195	-213	-230
	AtREG589	`AAAAAGCC`		PPDB Motif		PLACE Motif
	AtREG409	`AAAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG376	`AAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG378	`AAGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG591	`CCCATGGG`		PPDB Motif	`GCCCA, CCATGG`	PLACE Motif
	AtREG507	`GCCCATGGGC`		PPDB Motif	`GCCCA, CCATGG`	PLACE Motif
	AtREG504	`CATGGGCC`		PPDB Motif	`GCCCA, CCATGG`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG490	`ATGGGCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG484	`TGGGCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
REG	`TTAATGGG`		-	4533218	4533225	-253	-260
	AtREG396	`TTAATGGG`		PPDB Motif	`GCCCA`	PLACE Motif	`TTAATGG`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 34 + 4526811 AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	34	+	4526811	AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone + 4526784 AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4

TSS clone T clone + 4526787 AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4

TSS clone A clone + 4526813 AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4

TSS clone G clone + 4526814 AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4

TSS clone G clone + 4526824 AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4

TSS clone T clone + 4526825 AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	+	4526784	AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4
TSS clone	`T`	clone	+	4526787	AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4
TSS clone	`A`	clone	+	4526813	AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4
TSS clone	`G`	clone	+	4526814	AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4
TSS clone	`G`	clone	+	4526824	AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4
TSS clone	`T`	clone	+	4526825	AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG GAATGGGCTTTTA + 4526690 4526702 AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4

AtREG643 GAATGGGC      PPDB Motif GCCCA PLACE Motif

AtREG372 AATGGGCT     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378   ATGGGCTT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376    TGGGCTTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG409     GGGCTTTT PPDB Motif GCCCA PLACE Motif

AtREG549      GGCTTTTA PPDB Motif PLACE Motif

REG GTAGGCCCATTAT + 4526706 4526718 AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4

AtREG435 GTAGGCCC      PPDB Motif GCCCA PLACE Motif GGGCC

AtREG358 TAGGCCCA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354   AGGCCCAT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG361    GGCCCATT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG357     GCCCATTA PPDB Motif GCCCA PLACE Motif

AtREG546      CCCATTAT PPDB Motif PLACE Motif

REG CAATTGGGCCCATCATTGACTTT + 4526730 4526752 AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4

AtREG647 CAATTGGG                PPDB Motif PLACE Motif

AtREG418 AATTGGGC               PPDB Motif GCCCA PLACE Motif

AtREG352   ATTGGGCC              PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG392    TTGGGCCC             PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG422     TGGGCCCA            PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG391      GGGCCCAT           PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG403       GGCCCATC          PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG635        GCCCATCA         PPDB Motif GCCCA PLACE Motif

AtREG632                TTGACTTT PPDB Motif PLACE Motif TTGAC

REG TTAATGGG + 4526758 4526765 AT5G14030.1, AT5G14030.2, AT5G14030.3, AT5G14030.4

AtREG396 TTAATGGG PPDB Motif GCCCA PLACE Motif TTAATGG