PlantPromoterDB promoter information of AT5G14040.1
Summary of Gene (AT5G14040.1)
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Overview
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Focused view (chromosome 5: 4535565-4534366)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G14040.1 5'->3' (-) Promoter sequence AT5G14050.1
AT5G14060.1 AT5G14060.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G14040.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 254 | - | 4533070 | -105 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 4533070 | -105 |
| TSS clone | T | clone | - | 4533069 | -104 |
| TSS clone | T | clone | - | 4533068 | -103 |
| TSS clone | G | clone | - | 4533067 | -102 |
| TSS clone | G | clone | - | 4533066 | -101 |
| TSS clone | T | clone | - | 4533065 | -100 |
| TSS clone | A | clone | - | 4533049 | -84 |
| TSS clone | A | clone | - | 4533047 | -82 |
| TSS clone | A | clone | - | 4533041 | -76 |
| TSS clone | T | clone | - | 4532994 | -29 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGTAATTA | - | 4533144 | 4533151 | -179 | -186 | |||
| AtREG646 | CGTAATTA | ABA | PPDB Motif | PLACE Motif | |||||
| REG | AAAAAGCCCATGGGCCAA | - | 4533178 | 4533195 | -213 | -230 | |||
| AtREG589 | AAAAAGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG409 | AAAAGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG376 | AAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG378 | AAGCCCAT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG591 | CCCATGGG | PPDB Motif | GCCCA, CCATGG | PLACE Motif | |||||
| AtREG507 | GCCCATGGGC | PPDB Motif | GCCCA, CCATGG | PLACE Motif | |||||
| AtREG504 | CATGGGCC | PPDB Motif | GCCCA, CCATGG | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG490 | ATGGGCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG484 | TGGGCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| REG | TTAATGGG | - | 4533218 | 4533225 | -253 | -260 | |||
| AtREG396 | TTAATGGG | PPDB Motif | GCCCA | PLACE Motif | TTAATGG | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||