Summary of Gene (AT5G14040.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G14040.1 5'->3' (-) Promoter sequence AT5G14050.1
AT5G14060.1 AT5G14060.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 254 | - | 4533070 | -105 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 4533070 | -105 |
TSS clone | T | clone | - | 4533069 | -104 |
TSS clone | T | clone | - | 4533068 | -103 |
TSS clone | G | clone | - | 4533067 | -102 |
TSS clone | G | clone | - | 4533066 | -101 |
TSS clone | T | clone | - | 4533065 | -100 |
TSS clone | A | clone | - | 4533049 | -84 |
TSS clone | A | clone | - | 4533047 | -82 |
TSS clone | A | clone | - | 4533041 | -76 |
TSS clone | T | clone | - | 4532994 | -29 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CGTAATTA | - | 4533144 | 4533151 | -179 | -186 | |||
AtREG646 | CGTAATTA | ABA | PPDB Motif |   | PLACE Motif |   | |||
REG | AAAAAGCCCATGGGCCAA | - | 4533178 | 4533195 | -213 | -230 | |||
AtREG589 | AAAAAGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG409 | AAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG376 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | AAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG591 | CCCATGGG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
AtREG507 | GCCCATGGGC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
AtREG504 | CATGGGCC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG490 | ATGGGCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG484 | TGGGCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
REG | TTAATGGG | - | 4533218 | 4533225 | -253 | -260 | |||
AtREG396 | TTAATGGG | PPDB Motif | GCCCA  | PLACE Motif | TTAATGG  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | A | clone | + | 4535597 | AT5G14060.1, AT5G14060.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |