PlantPromoterDB promoter information of AT5G14050.1

Summary of Gene (AT5G14050.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G14050 TAIR NCBI
Gene model	AT5G14050.1
Description	transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: TAF5 (TBP-ASSOCIATED FACTOR 5); nucleotide binding / transcription regulator (TAIR:AT5G25150.1); Has 4822 Blast hits to 3684 proteins in 283 species: Archae - 24; Bacteria - 1509; Metazoa - 1460; Fungi - 771; Plants - 200; Viruses - 2; Other Eukaryotes - 856 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 4532539-4533738)

`Genome position from initiation codon` `TSS from cDNA TSS information AT5G14050.1 5'->3' (+) Promoter sequence AT5G14040.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G14050.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone + 4533273 -266

TSS clone peak A clone + 4533291 -248

TSS clone T clone + 4533297 -242

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	+	4533273	-266
TSS clone peak	`A`	clone	+	4533291	-248
TSS clone	`T`	clone	+	4533297	-242

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GGGCTTTATTGGGC + 4533093 4533106 -446 -433

AtREG365 GGGCTTTA       PPDB Motif GCCCA PLACE Motif

AtREG601 GGCTTTAT      PPDB Motif PLACE Motif

AtREG417      TTATTGGG PPDB Motif GCCCA PLACE Motif

AtREG355       TATTGGGC PPDB Motif GCCCA PLACE Motif

REG TAATTACG + 4533144 4533151 -395 -388

AtREG646 TAATTACG ABA PPDB Motif PLACE Motif

REG TTGGCCCATGGGCTTTTT + 4533178 4533195 -361 -344

AtREG484 TTGGCCCA           PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG490 TGGCCCAT          PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG504   GGCCCATG         PPDB Motif GCCCA, CCATGG PLACE Motif GGGCC, TGGGCY

AtREG591     CCCATGGG       PPDB Motif GCCCA, CCATGG PLACE Motif

AtREG507    GCCCATGGGC      PPDB Motif GCCCA, CCATGG PLACE Motif

AtREG378        ATGGGCTT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376         TGGGCTTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG409          GGGCTTTT PPDB Motif GCCCA PLACE Motif

AtREG589           GGCTTTTT PPDB Motif PLACE Motif

REG CCCATTAA + 4533218 4533225 -321 -314

AtREG396 CCCATTAA PPDB Motif GCCCA PLACE Motif TTAATGG

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GGGCTTTATTGGGC`		+	4533093	4533106	-446	-433
	AtREG365	`GGGCTTTA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG601	`GGCTTTAT`		PPDB Motif		PLACE Motif
	AtREG417	`TTATTGGG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG355	`TATTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`TAATTACG`		+	4533144	4533151	-395	-388
	AtREG646	`TAATTACG`	ABA	PPDB Motif		PLACE Motif
REG	`TTGGCCCATGGGCTTTTT`		+	4533178	4533195	-361	-344
	AtREG484	`TTGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG490	`TGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG504	`GGCCCATG`		PPDB Motif	`GCCCA, CCATGG`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG591	`CCCATGGG`		PPDB Motif	`GCCCA, CCATGG`	PLACE Motif
	AtREG507	`GCCCATGGGC`		PPDB Motif	`GCCCA, CCATGG`	PLACE Motif
	AtREG378	`ATGGGCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG376	`TGGGCTTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG409	`GGGCTTTT`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG589	`GGCTTTTT`		PPDB Motif		PLACE Motif
REG	`CCCATTAA`		+	4533218	4533225	-321	-314
	AtREG396	`CCCATTAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TTAATGG`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 254 - 4533070 AT5G14040.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	254	-	4533070	AT5G14040.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone - 4533070 AT5G14040.1

TSS clone T clone - 4533069 AT5G14040.1

TSS clone T clone - 4533068 AT5G14040.1

TSS clone G clone - 4533067 AT5G14040.1

TSS clone G clone - 4533066 AT5G14040.1

TSS clone T clone - 4533065 AT5G14040.1

TSS clone A clone - 4533049 AT5G14040.1

TSS clone A clone - 4533047 AT5G14040.1

TSS clone A clone - 4533041 AT5G14040.1

TSS clone T clone - 4532994 AT5G14040.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	-	4533070	AT5G14040.1
TSS clone	`T`	clone	-	4533069	AT5G14040.1
TSS clone	`T`	clone	-	4533068	AT5G14040.1
TSS clone	`G`	clone	-	4533067	AT5G14040.1
TSS clone	`G`	clone	-	4533066	AT5G14040.1
TSS clone	`T`	clone	-	4533065	AT5G14040.1
TSS clone	`A`	clone	-	4533049	AT5G14040.1
TSS clone	`A`	clone	-	4533047	AT5G14040.1
TSS clone	`A`	clone	-	4533041	AT5G14040.1
TSS clone	`T`	clone	-	4532994	AT5G14040.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CGTAATTA - 4533144 4533151 AT5G14040.1

AtREG646 CGTAATTA ABA PPDB Motif PLACE Motif

REG AAAAAGCCCATGGGCCAA - 4533178 4533195 AT5G14040.1

AtREG589 AAAAAGCC           PPDB Motif PLACE Motif

AtREG409 AAAAGCCC          PPDB Motif GCCCA PLACE Motif

AtREG376   AAAGCCCA         PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378    AAGCCCAT        PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG591       CCCATGGG     PPDB Motif GCCCA, CCATGG PLACE Motif

AtREG507      GCCCATGGGC    PPDB Motif GCCCA, CCATGG PLACE Motif

AtREG504         CATGGGCC   PPDB Motif GCCCA, CCATGG PLACE Motif GGGCC, TGGGCY

AtREG490          ATGGGCCA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG484           TGGGCCAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG TTAATGGG - 4533218 4533225 AT5G14040.1

AtREG396 TTAATGGG PPDB Motif GCCCA PLACE Motif TTAATGG