Summary of Gene (AT5G14120)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G14120 5'->3' (+) Promoter sequence AT5G14105.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 8 | + | 4555845 | -463 |
TSS peak | A | 51 | + | 4556163 | -145 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 4555840 | -468 |
TSS clone | A | clone | + | 4556159 | -149 |
TSS clone | G | clone | + | 4556160 | -148 |
TSS clone | T | clone | + | 4556230 | -78 |
TSS clone | A | clone | + | 4556237 | -71 |
TSS clone | T | clone | + | 4556254 | -54 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCTTTCT | + | 4556199 | 4556207 | -109 | -101 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTCCACGT | + | 4555568 | 4555575 | -740 | -733 | |||
AtREG627 | TTCCACGT | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | ||||
REG | CGTAATTA | + | 4556022 | 4556029 | -286 | -279 | |||
AtREG646 | CGTAATTA | ABA | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CCGTTAAA | - | 4551871 | 4551878 | AT5G14100.1 | ||||
AtREG610 | CCGTTAAA | PPDB Motif |   | PLACE Motif | YAACKG, CNGTTR  |