PlantPromoterDB promoter information of AT5G14120

Summary of Gene (AT5G14120)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G14120 TAIR NCBI
Gene model	AT5G14120
Description	nodulin family protein; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nodulin family protein (TAIR:AT3G01930.2); Has 1558 Blast hits to 1511 proteins in 424 species: Archae - 7; Bacteria - 707; Metazoa - 14; Fungi - 166; Plants - 321; Viruses - 0; Other Eukaryotes - 343 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 4570008-4571207)

`Genome position from initiation codon` `TSS from cDNA TSS information AT5G14120 5'->3' (+) Promoter sequence AT5G14170.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G14120

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 8 + 4555845 -463

TSS peak A 51 + 4556163 -145

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	8	+	4555845	-463
TSS peak	`A`	51	+	4556163	-145

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone + 4555840 -468

TSS clone A clone + 4556159 -149

TSS clone G clone + 4556160 -148

TSS clone T clone + 4556230 -78

TSS clone A clone + 4556237 -71

TSS clone T clone + 4556254 -54

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	+	4555840	-468
TSS clone	`A`	clone	+	4556159	-149
TSS clone	`G`	clone	+	4556160	-148
TSS clone	`T`	clone	+	4556230	-78
TSS clone	`A`	clone	+	4556237	-71
TSS clone	`T`	clone	+	4556254	-54

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTCTTTCT + 4556199 4556207 -109 -101

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTCTTTCT`	+	4556199	4556207	-109	-101
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TTCCACGT + 4555568 4555575 -740 -733

AtREG627 TTCCACGT PPDB Motif ACGT PLACE Motif ACGT, ACGTG

REG CGTAATTA + 4556022 4556029 -286 -279

AtREG646 CGTAATTA ABA PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TTCCACGT`		+	4555568	4555575	-740	-733
	AtREG627	`TTCCACGT`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
REG	`CGTAATTA`		+	4556022	4556029	-286	-279
	AtREG646	`CGTAATTA`	ABA	PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak C 4 - 4570944 AT5G14170.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`C`	4	-	4570944	AT5G14170.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone - 4570945 AT5G14170.1

TSS clone T clone - 4570943 AT5G14170.1

TSS clone A clone - 4570940 AT5G14170.1

TSS clone T clone - 4570936 AT5G14170.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	-	4570945	AT5G14170.1
TSS clone	`T`	clone	-	4570943	AT5G14170.1
TSS clone	`A`	clone	-	4570940	AT5G14170.1
TSS clone	`T`	clone	-	4570936	AT5G14170.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TTTCTCTCTC - 4570942 4570951 AT5G14170.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TTTCTCTCTC`	-	4570942	4570951	AT5G14170.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CGGGTCGGGTC - 4571000 4571010 AT5G14170.1

AtREG375 CGGGTCGG    PPDB Motif CCGAC PLACE Motif CCGAC

AtREG442 GGGTCGGG   PPDB Motif CCGAC PLACE Motif CCGAC

AtREG405   GGTCGGGT PPDB Motif CCGAC PLACE Motif CCGAC

AtREG390    GTCGGGTC PPDB Motif CCGAC, GGGACCC PLACE Motif CCGAC

REG GTGGGCTTTAA - 4571016 4571026 AT5G14170.1

AtREG518 GTGGGCTT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376 TGGGCTTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG365   GGGCTTTA PPDB Motif GCCCA PLACE Motif

AtREG545    GGCTTTAA PPDB Motif PLACE Motif

REG AGTTGGGCCA - 4571044 4571053 AT5G14170.1

AtREG607 AGTTGGGC   PPDB Motif GCCCA PLACE Motif

AtREG449 GTTGGGCC PPDB Motif GCCCA, CCAACGG PLACE Motif GGGCC, TGGGCY

AtREG420   TTGGGCCA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY