PlantPromoterDB promoter information of AT5G14170.1
Summary of Gene (AT5G14170.1)
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Overview
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Focused view (chromosome 5: 4571444-4570245)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G14170.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G14170.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | C | 4 | - | 4570944 | -500 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 4570945 | -501 |
| TSS clone | T | clone | - | 4570943 | -499 |
| TSS clone | A | clone | - | 4570940 | -496 |
| TSS clone | T | clone | - | 4570936 | -492 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTTCTCTCTC | - | 4570942 | 4570951 | -498 | -507 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGGGTCGGGTC | - | 4571000 | 4571010 | -556 | -566 | |||
| AtREG375 | CGGGTCGG | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||
| AtREG442 | GGGTCGGG | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||
| AtREG405 | GGTCGGGT | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||
| AtREG390 | GTCGGGTC | PPDB Motif | CCGAC, GGGACCC | PLACE Motif | CCGAC | ||||
| REG | GTGGGCTTTAA | - | 4571016 | 4571026 | -572 | -582 | |||
| AtREG518 | GTGGGCTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG376 | TGGGCTTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG365 | GGGCTTTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG545 | GGCTTTAA | PPDB Motif | PLACE Motif | ||||||
| REG | AGTTGGGCCA | - | 4571044 | 4571053 | -600 | -609 | |||
| AtREG607 | AGTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG449 | GTTGGGCC | PPDB Motif | GCCCA, CCAACGG | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG420 | TTGGGCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||