PlantPromoterDB promoter information of AT5G14220.1
Summary of Gene (AT5G14220.1)
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Overview
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Focused view (chromosome 5: 4588369-4587170)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G14220.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G14220.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 2 | - | 4587379 | -10 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 4587427 | -58 |
| TSS clone | A | clone | - | 4587402 | -33 |
| TSS clone | G | clone | - | 4587382 | -13 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TGTCGTTTT | - | 4587469 | 4587477 | -100 | -108 | |||
| AtREG569 | TGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| AtREG520 | GTCGTTTT | PPDB Motif | PLACE Motif | ||||||
| REG | ATAATGGGCCTGA | - | 4587498 | 4587510 | -129 | -141 | |||
| AtREG546 | ATAATGGG | PPDB Motif | PLACE Motif | ||||||
| AtREG357 | TAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG361 | AATGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | ATGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG370 | TGGGCCTG | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG374 | GGGCCTGA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| REG | CAAAGGCCCGTTA | - | 4587526 | 4587538 | -157 | -169 | |||
| AtREG656 | CAAAGGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG359 | AAAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG429 | AGGCCCGT | PPDB Motif | ACGGGC | PLACE Motif | GGGCC | ||||
| AtREG401 | GGCCCGTT | PPDB Motif | AAACG(C/G), ACGGGC, CCAACGG | PLACE Motif | GGGCC | ||||
| AtREG399 | GCCCGTTA | PPDB Motif | ACGGGC | PLACE Motif | YAACKG, CNGTTR | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||