PlantPromoterDB promoter information of AT5G14250.2
Summary of Gene (AT5G14250.2)
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Overview
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Focused view (chromosome 5: 4596970-4598169)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G14250.2 5'->3' (+) Promoter sequence AT5G14240.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G14250.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 8 | + | 4597876 | -94 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GTATATATATT | + | 4597834 | 4597844 | -136 | -126 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAAAGGCC | + | 4597687 | 4597694 | -283 | -276 | |||
| AtREG459 | AAAAGGCC | PPDB Motif | PLACE Motif | ||||||
| REG | CTAAACCGA | + | 4597714 | 4597722 | -256 | -248 | |||
| AtREG511 | CTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | CGAACCGG | + | 4597744 | 4597751 | -226 | -219 | |||
| AtREG423 | CGAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TAAAAGCC | + | 4597764 | 4597771 | -206 | -199 | |||
| AtREG549 | TAAAAGCC | PPDB Motif | PLACE Motif | ||||||
| REG | CTTAACCG | + | 4597814 | 4597821 | -156 | -149 | |||
| AtREG605 | CTTAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 13 | - | 4597660 | AT5G14240.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | G | clone | - | 4597660 | AT5G14240.1 |
| TSS clone | T | clone | - | 4597656 | AT5G14240.1 |
| TSS clone | C | clone | - | 4597653 | AT5G14240.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCTCCTCT | - | 4597615 | 4597623 | AT5G14240.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | TCGGTTTAG | - | 4597714 | 4597722 | AT5G14240.1 | ||||
| AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG511 | CGGTTTAG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | CCGGTTCG | - | 4597744 | 4597751 | AT5G14240.1 | ||||
| AtREG423 | CCGGTTCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | GGCTTTTA | - | 4597764 | 4597771 | AT5G14240.1 | ||||
| AtREG549 | GGCTTTTA | PPDB Motif | PLACE Motif | ||||||
| REG | CGGTTAAG | - | 4597814 | 4597821 | AT5G14240.1 | ||||
| AtREG605 | CGGTTAAG | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||