PlantPromoterDB promoter information of AT5G14440.1

Summary of Gene (AT5G14440.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G14440 TAIR NCBI
Gene model	AT5G14440.1
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Surfeit locus 2 (InterPro:IPR008833); BEST Arabidopsis thaliana protein match is: surfeit locus protein 2 family protein / SURF2 family protein (TAIR:AT5G40570.1); Has 6533 Blast hits to 4299 proteins in 259 species: Archae - 4; Bacteria - 127; Metazoa - 2727; Fungi - 698; Plants - 260; Viruses - 77; Other Eukaryotes - 2640 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 4658807-4657608)

`Genome position from initiation codon` `AT5G14440.2 TSS from cDNA TSS information AT5G14440.1 5'->3' (-) Promoter sequence AT5G14450.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G14440.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak G clone - 4657907 -100

TSS clone peak A clone - 4657831 -24

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`G`	clone	-	4657907	-100
TSS clone peak	`A`	clone	-	4657831	-24

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CCTCCTTC - 4657845 4657852 -38 -45

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CCTCCTTC`	-	4657845	4657852	-38	-45
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AAAACGGCA - 4657880 4657888 -73 -81

AtREG531 AAAACGGC PPDB Motif AAACG(C/G) PLACE Motif

AtREG500 AAACGGCA PPDB Motif AAACG(C/G) PLACE Motif

REG TAAACGACGT - 4657911 4657920 -104 -113

AtREG565 TAAACGAC   PPDB Motif PLACE Motif

AtREG415 AAACGACG PPDB Motif PLACE Motif

AtREG493   AACGACGT PPDB Motif ACGT PLACE Motif ACGT

REG TAAAGGCCCATATA - 4657950 4657963 -143 -156

AtREG467 TAAAGGCC       PPDB Motif PLACE Motif

AtREG359 AAAGGCCC      PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353   AAGGCCCA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354    AGGCCCAT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG364     GGCCCATA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG432      GCCCATAT PPDB Motif GCCCA PLACE Motif

AtREG620       CCCATATA PPDB Motif GCCCA PLACE Motif

REG TTATTGGGCTGA - 4657974 4657985 -167 -178

AtREG417 TTATTGGG     PPDB Motif GCCCA PLACE Motif

AtREG355 TATTGGGC    PPDB Motif GCCCA PLACE Motif

AtREG402   ATTGGGCT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG609     TGGGCTGA PPDB Motif GCCCA PLACE Motif TGGGCY

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AAAACGGCA`		-	4657880	4657888	-73	-81
	AtREG531	`AAAACGGC`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
	AtREG500	`AAACGGCA`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
REG	`TAAACGACGT`		-	4657911	4657920	-104	-113
	AtREG565	`TAAACGAC`		PPDB Motif		PLACE Motif
	AtREG415	`AAACGACG`		PPDB Motif		PLACE Motif
	AtREG493	`AACGACGT`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT`
REG	`TAAAGGCCCATATA`		-	4657950	4657963	-143	-156
	AtREG467	`TAAAGGCC`		PPDB Motif		PLACE Motif
	AtREG359	`AAAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG353	`AAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG354	`AGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG364	`GGCCCATA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG432	`GCCCATAT`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG620	`CCCATATA`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`TTATTGGGCTGA`		-	4657974	4657985	-167	-178
	AtREG417	`TTATTGGG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG355	`TATTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG402	`ATTGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG609	`TGGGCTGA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone peak G clone + 4658441 AT5G14450.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone peak	`G`	clone	+	4658441	AT5G14450.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box CTTATATAAGA + 4658407 4658417 AT5G14450.1

Y Patch CTCTCTTT + 4658465 4658472 AT5G14450.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`CTTATATAAGA`	+	4658407	4658417	AT5G14450.1
Y Patch	`CTCTCTTT`	+	4658465	4658472	AT5G14450.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG ACCGTTAG + 4658232 4658239 AT5G14450.1

AtREG603 ACCGTTAG PPDB Motif PLACE Motif YAACKG, CNGTTR

REG CCAATAAG + 4658256 4658263 AT5G14450.1

AtREG611 CCAATAAG PPDB Motif PLACE Motif