Summary of Gene (AT5G14550.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G14550.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 4 | - | 4694055 | -323 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 4694054 | -322 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTCTTCC | - | 4694029 | 4694037 | -297 | -305 |
Y Patch | TCTCCTCT | - | 4694056 | 4694063 | -324 | -331 |
Y Patch | TCTTTCTC | - | 4694074 | 4694081 | -342 | -349 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AGAGGCCCAC | - | 4694130 | 4694139 | -398 | -407 | |||
AtREG411 | AGAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG447 | GAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG482 | AGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
REG | TCACGTGTT | - | 4694317 | 4694325 | -585 | -593 | |||
AtREG628 | TCACGTGT | DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  | |||
AtREG590 | CACGTGTT | ABA, JA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | G | clone | + | 4693504 | AT5G14560.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | AGTATATACC | + | 4693463 | 4693472 | AT5G14560.1 | |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CCCAATTA | + | 4693434 | 4693441 | AT5G14560.1 | ||||
AtREG600 | CCCAATTA | PPDB Motif | GCCCA  | PLACE Motif |   |