Summary of Gene (AT5G14580)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G14580 5'->3' (-) Promoter sequence AT5G14600.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 2 | - | 4703615 | -602 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCAAACCG | - | 4703706 | 4703713 | -693 | -700 | |||
AtREG550 | CCAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 5 | + | 4706974 | AT5G14600.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | + | 4706983 | AT5G14600.1 |
TSS clone | A | clone | - | 4706738 | AT5G14590.1 |
TSS clone | A | clone | - | 4706735 | AT5G14590.1 |
TSS clone | T | clone | - | 4706734 | AT5G14590.1 |
TSS clone peak | A | clone | - | 4706732 | AT5G14590.1 |
TSS clone | C | clone | - | 4706698 | AT5G14590.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTCTTTTCCTTCT | - | 4706770 | 4706784 | AT5G14590.1 | |
Y Patch | TTCTTCCTTCTC | + | 4706984 | 4706995 | AT5G14600.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GTAGGCCCAACATAAGGCCCAGTA | + | 4706802 | 4706825 | AT5G14600.1 | ||||
AtREG435 | GTAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG358 | TAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | AGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG449 | GGCCCAAC | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG543 | GCCCAACA | PPDB Motif | GCCCA  | PLACE Motif | CAACA  | ||||
AtREG425 | ATAAGGCC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG351 | TAAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG353 | AAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG410 | AGGCCCAG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG384 | GGCCCAGT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG434 | GCCCAGTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CCAAACCGGAT | + | 4706847 | 4706857 | AT5G14600.1 | ||||
AtREG550 | CCAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG496 | CAAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG521 | AAACCGGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG561 | AACCGGAT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | GCCGGTTCG | + | 4706860 | 4706868 | AT5G14600.1 | ||||
AtREG637 | GCCGGTTC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG423 | CCGGTTCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | GTCCGGTT | + | 4706891 | 4706898 | AT5G14600.1 | ||||
AtREG573 | GTCCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TACTGGGCCTTATGTTGGGCCTAC | - | 4706802 | 4706825 | AT5G14590.1 | ||||
AtREG434 | TACTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG384 | ACTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG410 | CTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG353 | TGGGCCTT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG351 | GGGCCTTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG425 | GGCCTTAT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG543 | TGTTGGGC | PPDB Motif | GCCCA  | PLACE Motif | CAACA  | ||||
AtREG449 | GTTGGGCC | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | TTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG358 | TGGGCCTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG435 | GGGCCTAC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
REG | ATCCGGTTTGG | - | 4706847 | 4706857 | AT5G14590.1 | ||||
AtREG561 | ATCCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG521 | TCCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG496 | CCGGTTTG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG550 | CGGTTTGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | CGAACCGGC | - | 4706860 | 4706868 | AT5G14590.1 | ||||
AtREG423 | CGAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG637 | GAACCGGC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | AACCGGAC | - | 4706891 | 4706898 | AT5G14590.1 | ||||
AtREG573 | AACCGGAC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |