PlantPromoterDB promoter information of AT5G14790.1

Summary of Gene (AT5G14790.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G14790 TAIR NCBI
Gene model	AT5G14790.1
Description	binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT3G01450.1); Has 236 Blast hits to 236 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 7; Plants - 67; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 4787358-4788557)

`Genome position from initiation codon` `TSS from cDNA TSS information AT5G14790.1 5'->3' (+) Promoter sequence AT5G14800.1 AT5G14800.2 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G14790.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone - 4787838 AT5G14800.1, AT5G14800.2

TSS clone peak G clone - 4787837 AT5G14800.1, AT5G14800.2

TSS clone peak G clone - 4787836 AT5G14800.1, AT5G14800.2

TSS clone A clone - 4787835 AT5G14800.1, AT5G14800.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	-	4787838	AT5G14800.1, AT5G14800.2
TSS clone peak	`G`	clone	-	4787837	AT5G14800.1, AT5G14800.2
TSS clone peak	`G`	clone	-	4787836	AT5G14800.1, AT5G14800.2
TSS clone	`A`	clone	-	4787835	AT5G14800.1, AT5G14800.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box GGCTATAAATA - 4787863 4787873 AT5G14800.1, AT5G14800.2

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`GGCTATAAATA`	-	4787863	4787873	AT5G14800.1, AT5G14800.2
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG AAAAGCCCAAAA - 4787951 4787962 AT5G14800.1, AT5G14800.2

AtREG409 AAAAGCCC     PPDB Motif GCCCA PLACE Motif

AtREG376 AAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407   AAGCCCAA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG469    AGCCCAAA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG529     GCCCAAAA PPDB Motif GCCCA PLACE Motif

REG ATTGGGCCTACTTGGCCCAATGCCCAAAC - 4787970 4787998 AT5G14800.1, AT5G14800.2

AtREG352 ATTGGGCC     GGCCCAAT         PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356 TTGGGCCT                     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG358   TGGGCCTA                    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG435    GGGCCTAC                   PPDB Motif GCCCA PLACE Motif GGGCC

AtREG484            TTGGCCCA           PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG420             TGGCCCAA          PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG461               GCCCAATG        PPDB Motif GCCCA PLACE Motif

AtREG474                      GCCCAAAC PPDB Motif GCCCA PLACE Motif

REG ATCCACGTCATC - 4788039 4788050 AT5G14800.1, AT5G14800.2

AtREG547 ATCCACGT     ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG419   CCACGTCA   PPDB Motif ACGT PLACE Motif ACGT, ACGTG, TGACGTGG, CCACGTCA

AtREG483    CACGTCAT PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG578     ACGTCATC ABA PPDB Motif ACGT PLACE Motif ACGT