PlantPromoterDB promoter information of AT5G15260.1
Summary of Gene (AT5G15260.1)
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Overview
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Focused view (chromosome 5: 4955350-4954151)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G15260.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G15260.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 2 | - | 4954947 | -597 |
| TSS peak | G | 2 | - | 4954919 | -569 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 4954916 | -566 |
| TSS clone | T | clone | - | 4954865 | -515 |
| TSS clone | A | clone | - | 4954834 | -484 |
| TSS clone | T | clone | - | 4954827 | -477 |
| TSS clone | A | clone | - | 4954682 | -332 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCTCTTCCTTCT | - | 4954897 | 4954909 | -547 | -559 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGTAATTA | - | 4955146 | 4955153 | -796 | -803 | |||
| AtREG646 | CGTAATTA | ABA | PPDB Motif | PLACE Motif | |||||
| REG | CTTGGGCCTTTT | - | 4955167 | 4955178 | -817 | -828 | |||
| AtREG505 | CTTGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG356 | TTGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG353 | TGGGCCTT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG359 | GGGCCTTT | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG459 | GGCCTTTT | PPDB Motif | PLACE Motif | ||||||
| REG | AATTGGGCTTC | - | 4955188 | 4955198 | -838 | -848 | |||
| AtREG418 | AATTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG402 | ATTGGGCT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG407 | TTGGGCTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG476 | TGGGCTTC | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| REG | CTTGGGCCGA | - | 4955228 | 4955237 | -878 | -887 | |||
| AtREG505 | CTTGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG414 | TTGGGCCG | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG393 | TGGGCCGA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||