PlantPromoterDB promoter information of AT5G15410.1

Summary of Gene (AT5G15410.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G15410 TAIR NCBI
Gene model	AT5G15410.1
Description	'defense, no death' gene (DND1) encodes a mutated cyclic nucleotide-gated cation channel; Same as CNGC2 (article ID 229): Cyclic nucleotide gated channel, activated by cAMP, conducts K+ and other monovalent cations but excludes Na+, does not contain the GYG amino acid sequence found in other channels with this conductivity profile. Conducts Ca2+ into cells which is linked to the generation of NO and the NO signaling pathway involved in the innate immune response to pathogens.

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Overview

Focused view (chromosome 5: 5007763-5006564)

`Genome position from initiation codon` `AT5G15410.2 TSS from cDNA TSS information AT5G15410.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G15410.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 27 - 5006811 -48

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	27	-	5006811	-48

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone - 5006900 -137

TSS clone G clone - 5006880 -117

TSS clone C clone - 5006814 -51

TSS clone C clone - 5006813 -50

TSS clone T clone - 5006812 -49

TSS clone G clone - 5006811 -48

TSS clone C clone - 5006810 -47

TSS clone A clone - 5006809 -46

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	-	5006900	-137
TSS clone	`G`	clone	-	5006880	-117
TSS clone	`C`	clone	-	5006814	-51
TSS clone	`C`	clone	-	5006813	-50
TSS clone	`T`	clone	-	5006812	-49
TSS clone	`G`	clone	-	5006811	-48
TSS clone	`C`	clone	-	5006810	-47
TSS clone	`A`	clone	-	5006809	-46

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box TCTCTATA - 5006844 5006851 -81 -88

Y Patch TTTCTTCTCTCCCTCTCC - 5006788 5006805 -25 -42

Y Patch CTCTTCTCTCTCCC - 5006823 5006836 -60 -73

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TCTCTATA`	-	5006844	5006851	-81	-88
Y Patch	`TTTCTTCTCTCCCTCTCC`	-	5006788	5006805	-25	-42
Y Patch	`CTCTTCTCTCTCCC`	-	5006823	5006836	-60	-73
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG ATAAACCGAA - 5006899 5006908 -136 -145

AtREG598 ATAAACCG   PPDB Motif AACCG(G/A) PLACE Motif

AtREG514 TAAACCGA PPDB Motif AACCG(G/A) PLACE Motif

AtREG568   AAACCGAA PPDB Motif AACCG(G/A) PLACE Motif

REG TTAAACCGGAA - 5006922 5006932 -159 -169

AtREG473 TTAAACCG    PPDB Motif AACCG(G/A) PLACE Motif

AtREG412 TAAACCGG   PPDB Motif AACCG(G/A) PLACE Motif

AtREG521   AAACCGGA PPDB Motif AACCG(G/A) PLACE Motif

AtREG534    AACCGGAA PPDB Motif AACCG(G/A) PLACE Motif

REG CCGGTTCGGTTT - 5006963 5006974 -200 -211

AtREG423 CCGGTTCG     PPDB Motif AACCG(G/A) PLACE Motif

AtREG456 CGGTTCGG    PPDB Motif AACCG(G/A) PLACE Motif

AtREG451   GGTTCGGT   PPDB Motif PLACE Motif

AtREG556    GTTCGGTT PPDB Motif AACCG(G/A) PLACE Motif

AtREG568     TTCGGTTT PPDB Motif AACCG(G/A) PLACE Motif

REG TGTGGGCCGTTTT - 5007036 5007048 -273 -285

AtREG612 TGTGGGCC      DREB1Aox PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG368   TGGGCCGT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG377    GGGCCGTT   PPDB Motif GCCCA, AAACG(C/G) PLACE Motif GGGCC

AtREG531      GCCGTTTT PPDB Motif AAACG(C/G) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`ATAAACCGAA`		-	5006899	5006908	-136	-145
	AtREG598	`ATAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG514	`TAAACCGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG568	`AAACCGAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`TTAAACCGGAA`		-	5006922	5006932	-159	-169
	AtREG473	`TTAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG412	`TAAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG521	`AAACCGGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG534	`AACCGGAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`CCGGTTCGGTTT`		-	5006963	5006974	-200	-211
	AtREG423	`CCGGTTCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG456	`CGGTTCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG451	`GGTTCGGT`		PPDB Motif		PLACE Motif
	AtREG556	`GTTCGGTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG568	`TTCGGTTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`TGTGGGCCGTTTT`		-	5007036	5007048	-273	-285
	AtREG612	`TGTGGGCC`	DREB1Aox	PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG368	`TGGGCCGT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG377	`GGGCCGTT`		PPDB Motif	`GCCCA, AAACG(C/G)`	PLACE Motif	`GGGCC`
	AtREG531	`GCCGTTTT`		PPDB Motif	`AAACG(C/G)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None