PlantPromoterDB promoter information of AT5G15530
Summary of Gene (AT5G15530)
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Overview
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Focused view (chromosome 5: 5037955-5039154)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G15530 5'->3' (+) Promoter sequence AT5G15520.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G15530
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 8 | + | 5038832 | -123 |
| TSS peak | G | 4 | + | 5038939 | -16 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 5038907 | -48 |
| TSS clone | T | clone | + | 5038908 | -47 |
| TSS clone | G | clone | + | 5038931 | -24 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTCCTTC | + | 5038910 | 5038919 | -45 | -36 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGGTTTGG | + | 5038785 | 5038792 | -170 | -163 | |||
| AtREG550 | CGGTTTGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | C | clone | - | 5038167 | AT5G15520.1 |
| TSS clone peak | T | clone | - | 5038166 | AT5G15520.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | ATATATATAGA | - | 5038192 | 5038202 | AT5G15520.1 | |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CGGGTCGA | - | 5038254 | 5038261 | AT5G15520.1 | ||||
| AtREG539 | CGGGTCGA | PPDB Motif | PLACE Motif | ||||||
| REG | ATGGCCCATAATGGG | - | 5038267 | 5038281 | AT5G15520.1 | ||||
| AtREG437 | ATGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG490 | TGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG364 | GGCCCATA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG394 | GCCCATAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG546 | ATAATGGG | PPDB Motif | PLACE Motif | ||||||