Summary of Gene (AT5G15920.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT5G15920.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 2 | + | 5195593 | -617 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTCTCTT | + | 5195603 | 5195610 | -607 | -600 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGGCCTAT | + | 5195459 | 5195466 | -751 | -744 | |||
AtREG362 | GGGCCTAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
REG | GTAAACCGGGTT | + | 5195473 | 5195484 | -737 | -726 | |||
AtREG519 | GTAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG412 | TAAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG455 | AACCGGGT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG516 | ACCGGGTT | PPDB Motif |   | PLACE Motif |   | ||||
REG | ATAACCGGAC | + | 5195493 | 5195502 | -717 | -708 | |||
AtREG548 | ATAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
AtREG621 | TAACCGGA | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
AtREG573 | AACCGGAC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TTGAACCGGC | + | 5195539 | 5195548 | -671 | -662 | |||
AtREG640 | TTGAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG480 | TGAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG637 | GAACCGGC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |