Summary of Gene (AT5G15960)
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Overview |
Genome position
from initiation codon AT5G15930.1 TSS from cDNA TSS information AT5G15960 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 31 | + | 5209932 | -60 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 5209932 | -60 |
TSS clone | T | clone | + | 5209933 | -59 |
TSS clone | T | clone | + | 5209936 | -56 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | GCCTATAAATATAAACC | + | 5209894 | 5209910 | -98 | -82 |
Y Patch | TCTCTTCTC | + | 5209923 | 5209931 | -69 | -61 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAAACGACACGTGA | + | 5209774 | 5209787 | -218 | -205 | |||
AtREG520 | AAAACGAC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG569 | AAACGACA | PPDB Motif |   | PLACE Motif |   | ||||
AtREG527 | AACGACAC | DREB1Aox | PPDB Motif |   | PLACE Motif |   | |||
AtREG428 | ACGACACG | ABA, DREB1Aox, Ethylene, Drought | PPDB Motif |   | PLACE Motif |   | |||
AtREG478 | CGACACGT | ABA, DREB1Aox, Drought | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC  | |||
AtREG366 | GACACGTG | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC  | |||
AtREG628 | ACACGTGA | DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  | |||
REG | ATCCACGTGGT | + | 5209851 | 5209861 | -141 | -131 | |||
AtREG547 | ATCCACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
AtREG408 | TCCACGTG | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG  | |||
AtREG544 | CACGTGGT | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
REG | CGTGGCAC | + | 5209873 | 5209880 | -119 | -112 | |||
AtREG444 | CGTGGCAC | PPDB Motif |   | PLACE Motif | GCCAC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 5199711 | AT5G15930.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TTTATATATATATCT | + | 5199712 | 5199726 | AT5G15930.1 | |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TTAAACCGA | + | 5199612 | 5199620 | AT5G15930.1 | ||||
AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |