PlantPromoterDB promoter information of AT5G16080.1

Summary of Gene (AT5G16080.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G16080 TAIR NCBI
Gene model	AT5G16080.1
Description	Arabidopsis thaliana carboxyesterase 17 (AtCXE17); FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: hydrolase (TAIR:AT1G68620.1); Has 7022 Blast hits to 7003 proteins in 938 species: Archae - 47; Bacteria - 3292; Metazoa - 1260; Fungi - 612; Plants - 651; Viruses - 3; Other Eukaryotes - 1157 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 5246467-5245268)

`Genome position from initiation codon` `AT5G16050.1 TSS from cDNA TSS information AT5G16080.1 5'->3' (-) Promoter sequence AT5G16060.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G16080.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak A clone - 5253618 -51

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`A`	clone	-	5253618	-51

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box TCTCTATATAAAGA - 5253641 5253654 -74 -87

TATA Box TATATACA - 5253659 5253666 -92 -99

Y Patch TCTCTCAT - 5253622 5253629 -55 -62

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TCTCTATATAAAGA`	-	5253641	5253654	-74	-87
TATA Box	`TATATACA`	-	5253659	5253666	-92	-99
Y Patch	`TCTCTCAT`	-	5253622	5253629	-55	-62
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG CCCAATTG - 5253746 5253753 -179 -186

AtREG647 CCCAATTG PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`CCCAATTG`		-	5253746	5253753	-179	-186
	AtREG647	`CCCAATTG`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone peak A clone + 5246123 AT5G16060.1

TSS clone T clone - 5245813 AT5G16050.1

TSS clone A clone - 5245811 AT5G16050.1

TSS clone C clone - 5245810 AT5G16050.1

TSS clone peak T clone - 5245808 AT5G16050.1

TSS clone T clone - 5245803 AT5G16050.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone peak	`A`	clone	+	5246123	AT5G16060.1
TSS clone	`T`	clone	-	5245813	AT5G16050.1
TSS clone	`A`	clone	-	5245811	AT5G16050.1
TSS clone	`C`	clone	-	5245810	AT5G16050.1
TSS clone peak	`T`	clone	-	5245808	AT5G16050.1
TSS clone	`T`	clone	-	5245803	AT5G16050.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TAAATGGG + 5245844 5245851 AT5G16060.1

AtREG443 TAAATGGG PPDB Motif GCCCA PLACE Motif

REG CCCAATTA + 5245883 5245890 AT5G16060.1

AtREG600 CCCAATTA PPDB Motif GCCCA PLACE Motif

REG ACGACACGTG + 5245895 5245904 AT5G16060.1

AtREG428 ACGACACG   ABA, DREB1Aox, Ethylene, Drought PPDB Motif PLACE Motif

AtREG478 CGACACGT ABA, DREB1Aox, Drought PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

AtREG366   GACACGTG ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC

REG AAATGACG + 5246058 5246065 AT5G16060.1

AtREG657 AAATGACG PPDB Motif PLACE Motif

REG TAATTGGG - 5245883 5245890 AT5G16050.1

AtREG600 TAATTGGG PPDB Motif GCCCA PLACE Motif

REG CACGTGTCGT - 5245895 5245904 AT5G16050.1

AtREG366 CACGTGTC   ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC

AtREG478 ACGTGTCG ABA, DREB1Aox, Drought PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

AtREG428   CGTGTCGT ABA, DREB1Aox, Ethylene, Drought PPDB Motif PLACE Motif

REG CGTCATTT - 5246058 5246065 AT5G16050.1

AtREG657 CGTCATTT PPDB Motif PLACE Motif