Summary of Gene (AT5G16080.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G16080.1 5'->3' (-) Promoter sequence AT5G16060.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 5253618 | -51 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TCTCTATATAAAGA | - | 5253641 | 5253654 | -74 | -87 |
TATA Box | TATATACA | - | 5253659 | 5253666 | -92 | -99 |
Y Patch | TCTCTCAT | - | 5253622 | 5253629 | -55 | -62 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCCAATTG | - | 5253746 | 5253753 | -179 | -186 | |||
AtREG647 | CCCAATTG | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | A | clone | + | 5246123 | AT5G16060.1 |
TSS clone | T | clone | - | 5245813 | AT5G16050.1 |
TSS clone | A | clone | - | 5245811 | AT5G16050.1 |
TSS clone | C | clone | - | 5245810 | AT5G16050.1 |
TSS clone peak | T | clone | - | 5245808 | AT5G16050.1 |
TSS clone | T | clone | - | 5245803 | AT5G16050.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TAAATGGG | + | 5245844 | 5245851 | AT5G16060.1 | ||||
AtREG443 | TAAATGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CCCAATTA | + | 5245883 | 5245890 | AT5G16060.1 | ||||
AtREG600 | CCCAATTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ACGACACGTG | + | 5245895 | 5245904 | AT5G16060.1 | ||||
AtREG428 | ACGACACG | ABA, DREB1Aox, Ethylene, Drought | PPDB Motif |   | PLACE Motif |   | |||
AtREG478 | CGACACGT | ABA, DREB1Aox, Drought | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC  | |||
AtREG366 | GACACGTG | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC  | |||
REG | AAATGACG | + | 5246058 | 5246065 | AT5G16060.1 | ||||
AtREG657 | AAATGACG | PPDB Motif |   | PLACE Motif |   | ||||
REG | TAATTGGG | - | 5245883 | 5245890 | AT5G16050.1 | ||||
AtREG600 | TAATTGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CACGTGTCGT | - | 5245895 | 5245904 | AT5G16050.1 | ||||
AtREG366 | CACGTGTC | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC  | |||
AtREG478 | ACGTGTCG | ABA, DREB1Aox, Drought | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC  | |||
AtREG428 | CGTGTCGT | ABA, DREB1Aox, Ethylene, Drought | PPDB Motif |   | PLACE Motif |   | |||
REG | CGTCATTT | - | 5246058 | 5246065 | AT5G16050.1 | ||||
AtREG657 | CGTCATTT | PPDB Motif |   | PLACE Motif |   |