Summary of Gene (AT5G16260.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT5G16260.1 5'->3' (+) Promoter sequence AT5G16250.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 5311207 | -156 |
TSS clone peak | T | clone | + | 5311208 | -155 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CGTCTTCCTCCT | + | 5311243 | 5311254 | -120 | -109 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GACCGTTG | + | 5310989 | 5310996 | -374 | -367 | |||
AtREG553 | GACCGTTG | Auxin | PPDB Motif | CCAACGG  | PLACE Motif | YAACKG, CNGTTR  | |||
REG | TGGGCCCAATG | + | 5311047 | 5311057 | -316 | -306 | |||
AtREG422 | TGGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG392 | GGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG352 | GGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG461 | GCCCAATG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GTGGGCCTAGTGGGCCGT | + | 5311084 | 5311101 | -279 | -262 | |||
AtREG482 | GTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG358 | TGGGCCTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG475 | GGGCCTAG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG532 | TAGTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG368 | TGGGCCGT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
REG | GGGCCTAATGGGCCG | + | 5311156 | 5311170 | -207 | -193 | |||
AtREG360 | GGGCCTAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG506 | GGCCTAAT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG558 | CTAATGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG357 | TAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG361 | AATGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG380 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 13 | - | 5310907 | AT5G16250.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | - | 5310951 | AT5G16250.1 |
TSS clone | C | clone | - | 5310908 | AT5G16250.1 |
TSS clone | A | clone | - | 5310907 | AT5G16250.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTTCTTCTTCTTCT | - | 5310880 | 5310895 | AT5G16250.1 | |
Y Patch | CTCTTCTC | - | 5310914 | 5310921 | AT5G16250.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CAACGGTC | - | 5310989 | 5310996 | AT5G16250.1 | ||||
AtREG553 | CAACGGTC | Auxin | PPDB Motif | CCAACGG  | PLACE Motif | YAACKG, CNGTTR  | |||
REG | CATTGGGCCCA | - | 5311047 | 5311057 | AT5G16250.1 | ||||
AtREG461 | CATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG352 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG392 | TTGGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG422 | TGGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
REG | ACGGCCCACTAGGCCCAC | - | 5311084 | 5311101 | AT5G16250.1 | ||||
AtREG368 | ACGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG532 | GCCCACTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG475 | CTAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG358 | TAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG482 | AGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
REG | ACGGCCCATTAGGCCC | - | 5311156 | 5311171 | AT5G16250.1 | ||||
AtREG368 | ACGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG380 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG361 | GGCCCATT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG357 | GCCCATTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG558 | CCCATTAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG506 | ATTAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG360 | TTAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  |