PlantPromoterDB promoter information of AT5G16390.1
Summary of Gene (AT5G16390.1)
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Overview
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Focused view (chromosome 5: 5364020-5362821)
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Genome position
from initiation codon AT5G16400.1 TSS from cDNA TSS information AT5G16390.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G16390.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 23 | - | 5363126 | -106 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 5363123 | -103 |
| TSS clone | T | clone | - | 5363122 | -102 |
| TSS clone | C | clone | - | 5363112 | -92 |
| TSS clone | T | clone | - | 5363093 | -73 |
| TSS clone | T | clone | - | 5363089 | -69 |
| TSS clone | T | clone | - | 5363081 | -61 |
| TSS clone | A | clone | - | 5363066 | -46 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTCTCTCTCTCTTTCT | - | 5363105 | 5363122 | -85 | -102 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATGACACGTGGCGA | - | 5363172 | 5363185 | -152 | -165 | |||
| AtREG438 | ATGACACG | ABA | PPDB Motif | PLACE Motif | |||||
| AtREG389 | TGACACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG366 | GACACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC | |||
| AtREG382 | ACACGTGG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG367 | CACGTGGC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC | |||
| AtREG371 | ACGTGGCG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG471 | CGTGGCGA | ABA | PPDB Motif | PLACE Motif | GCCAC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||