PlantPromoterDB promoter information of AT5G17330
Summary of Gene (AT5G17330)
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Overview
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Focused view (chromosome 5: 5710141-5711340)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G17330 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G17330
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 85 | + | 5711066 | -75 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 5711012 | -129 |
| TSS clone | A | clone | + | 5711060 | -81 |
| TSS clone | A | clone | + | 5711066 | -75 |
| TSS clone | T | clone | + | 5711067 | -74 |
| TSS clone | T | clone | + | 5711071 | -70 |
| TSS clone | T | clone | + | 5711098 | -43 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | ATATAAAAC | + | 5711022 | 5711030 | -119 | -111 |
| TATA Box | CATATAAAGG | + | 5711032 | 5711041 | -109 | -100 |
| Y Patch | TCTCTCAT | + | 5711044 | 5711051 | -97 | -90 |
| Y Patch | CTTTCTCTCTCTT | + | 5711089 | 5711101 | -52 | -40 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATATTGGGTCAAA | + | 5710863 | 5710875 | -278 | -266 | |||
| AtREG509 | ATATTGGG | PPDB Motif | PLACE Motif | ||||||
| AtREG592 | GGGTCAAA | PPDB Motif | PLACE Motif | TTGAC, TTGACC | |||||
| REG | TAGGGCTT | + | 5710929 | 5710936 | -212 | -205 | |||
| AtREG651 | TAGGGCTT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||