PlantPromoterDB promoter information of AT5G18100.1
Summary of Gene (AT5G18100.1)
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Overview
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Focused view (chromosome 5: 5986221-5987420)
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Genome position
from initiation codon AT5G18100.2 TSS from cDNA TSS information AT5G18100.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G18100.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 5 | + | 5987195 | -26 |
| TSS peak | A | 5 | + | 5987198 | -23 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 5987196 | -25 |
| TSS clone | A | clone | + | 5987198 | -23 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATCCGGTTTGG | + | 5987079 | 5987089 | -142 | -132 | |||
| AtREG561 | ATCCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG521 | TCCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG496 | CCGGTTTG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG550 | CGGTTTGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | CTTAACCG | + | 5987103 | 5987110 | -118 | -111 | |||
| AtREG605 | CTTAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| REG | ATCCGGTTTG | + | 5987119 | 5987128 | -102 | -93 | |||
| AtREG561 | ATCCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG521 | TCCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG496 | CCGGTTTG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||