Summary of Gene (AT5G19940.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G19940.1 5'->3' (+) Promoter sequence AT5G19930.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 17 | + | 6739689 | -4 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 6739634 | -59 |
TSS clone | T | clone | + | 6739645 | -48 |
TSS clone | C | clone | + | 6739649 | -44 |
TSS clone | T | clone | + | 6739651 | -42 |
TSS clone | C | clone | + | 6739654 | -39 |
TSS clone | T | clone | + | 6739655 | -38 |
TSS clone | T | clone | + | 6739657 | -36 |
TSS clone | A | clone | + | 6739661 | -32 |
TSS clone | A | clone | + | 6739684 | -9 |
TSS clone | A | clone | + | 6739690 | -3 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTCTCTCCC | + | 6739640 | 6739650 | -53 | -43 |
Y Patch | CTTCTCTCTCTT | + | 6739663 | 6739674 | -30 | -19 |
Y Patch | CTCTCTCC | + | 6739676 | 6739683 | -17 | -10 |
Y Patch | CTTCTTCTCTT | + | 6739706 | 6739716 | 13 | 23 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CATGGGCCTCAAATGGGCTGACCCAATAG | + | 6739430 | 6739458 | -263 | -235 | |||
AtREG504 | CATGGGCC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG354 | ATGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG447 | TGGGCCTC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG587 | GGGCCTCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG386 | AAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG372 | AATGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG609 | TGGGCTGA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG624 | CCCAATAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TGGGCCAT | + | 6739502 | 6739509 | -191 | -184 | |||
AtREG437 | TGGGCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
REG | TAACGCGG | + | 6739541 | 6739548 | -152 | -145 | |||
AtREG488 | TAACGCGG | SA | PPDB Motif |   | PLACE Motif |   | |||
REG | TATGGGCCC | + | 6739574 | 6739582 | -119 | -111 | |||
AtREG364 | TATGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG391 | ATGGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
REG | ATGACGTGGCAC | + | 6739600 | 6739611 | -93 | -82 | |||
AtREG483 | ATGACGTG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | ||||
AtREG419 | TGACGTGG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA  | ||||
AtREG388 | GACGTGGC | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | ||||
AtREG379 | ACGTGGCA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG444 | CGTGGCAC | PPDB Motif |   | PLACE Motif | GCCAC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | - | 6739348 | AT5G19930.1 |
TSS clone peak | A | clone | - | 6739347 | AT5G19930.1 |
TSS clone | C | clone | - | 6739292 | AT5G19930.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCCTCTCC | - | 6739336 | 6739343 | AT5G19930.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CTATTGGGTCAGCCCATTTGAGGCCCATG | - | 6739430 | 6739458 | AT5G19930.1 | ||||
AtREG624 | CTATTGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG609 | TCAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG372 | AGCCCATT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG386 | GCCCATTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG587 | TGAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG447 | GAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG354 | AGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG504 | GGCCCATG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif | GGGCC, TGGGCY  | ||||
REG | ATGGCCCA | - | 6739502 | 6739509 | AT5G19930.1 | ||||
AtREG437 | ATGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
REG | CCGCGTTA | - | 6739541 | 6739548 | AT5G19930.1 | ||||
AtREG488 | CCGCGTTA | SA | PPDB Motif |   | PLACE Motif |   | |||
REG | GGGCCCATA | - | 6739574 | 6739582 | AT5G19930.1 | ||||
AtREG391 | GGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG364 | GGCCCATA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
REG | GTGCCACGTCAT | - | 6739600 | 6739611 | AT5G19930.1 | ||||
AtREG444 | GTGCCACG | PPDB Motif |   | PLACE Motif | GCCAC  | ||||
AtREG379 | TGCCACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG388 | GCCACGTC | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | ||||
AtREG419 | CCACGTCA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA  | ||||
AtREG483 | CACGTCAT | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  |