Summary of Gene (AT5G19950)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G19950 5'->3' (-) Promoter sequence AT5G19990.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 6743773 | -71 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CGTCTTCC | - | 6743737 | 6743744 | -35 | -42 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TCAAAACG | - | 6743832 | 6743839 | -130 | -137 | |||
AtREG653 | TCAAAACG | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
REG | AAACCGGAAA | - | 6743910 | 6743919 | -208 | -217 | |||
AtREG521 | AAACCGGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG534 | AACCGGAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG644 | ACCGGAAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | ATATGGGCCATTAGGCCCACTA | - | 6743925 | 6743946 | -223 | -244 | |||
AtREG432 | ATATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG364 | TATGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG490 | ATGGGCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG437 | TGGGCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG506 | ATTAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG360 | TTAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG358 | TAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG482 | AGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG532 | GCCCACTA | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 21 | + | 6752055 | AT5G19990.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | C | clone | + | 6752034 | AT5G19990.1 |
TSS clone | T | clone | + | 6752054 | AT5G19990.1 |
TSS clone | G | clone | + | 6752055 | AT5G19990.1 |
TSS clone | A | clone | + | 6752056 | AT5G19990.1 |
TSS clone | T | clone | + | 6752057 | AT5G19990.1 |
TSS clone | A | clone | + | 6752060 | AT5G19990.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | ATATAATG | + | 6752021 | 6752028 | AT5G19990.1 | |
Y Patch | TCTCTCTCCT | + | 6752071 | 6752080 | AT5G19990.1 | |
Y Patch | TTTCTTCTC | + | 6752082 | 6752090 | AT5G19990.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |