PlantPromoterDB promoter information of AT5G19990.1
Summary of Gene (AT5G19990.1)
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Overview
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Focused view (chromosome 5: 6751144-6752343)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G19990.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G19990.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 21 | + | 6752055 | -89 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | + | 6752034 | -110 |
| TSS clone | T | clone | + | 6752054 | -90 |
| TSS clone | G | clone | + | 6752055 | -89 |
| TSS clone | A | clone | + | 6752056 | -88 |
| TSS clone | T | clone | + | 6752057 | -87 |
| TSS clone | A | clone | + | 6752060 | -84 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | ATATAATG | + | 6752021 | 6752028 | -123 | -116 |
| Y Patch | TCTCTCTCCT | + | 6752071 | 6752080 | -73 | -64 |
| Y Patch | TTTCTTCTC | + | 6752082 | 6752090 | -62 | -54 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TCCAACGG | + | 6751865 | 6751872 | -279 | -272 | |||
| AtREG554 | TCCAACGG | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||