PlantPromoterDB promoter information of AT5G20040.1
Summary of Gene (AT5G20040.1)
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Overview
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Focused view (chromosome 5: 6771980-6770781)
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Genome position
from initiation codon AT5G20045.1 TSS from cDNA TSS information AT5G20040.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G20040.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | - | 6771095 | -115 |
| TSS clone peak | A | clone | - | 6771094 | -114 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCTCCTTC | - | 6771064 | 6771071 | -84 | -91 |
| Y Patch | CGTCTCTCTTC | - | 6771096 | 6771106 | -116 | -126 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AACCGAACCG | - | 6771136 | 6771145 | -156 | -165 | |||
| AtREG556 | AACCGAAC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG451 | ACCGAACC | PPDB Motif | PLACE Motif | ||||||
| AtREG456 | CCGAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | GTTCGGTTTAT | - | 6771156 | 6771166 | -176 | -186 | |||
| AtREG556 | GTTCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG598 | CGGTTTAT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TCGGTTCG | - | 6771170 | 6771177 | -190 | -197 | |||
| AtREG575 | TCGGTTCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | GTAAACCGT | - | 6771184 | 6771192 | -204 | -212 | |||
| AtREG519 | GTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG652 | TAAACCGT | PPDB Motif | PLACE Motif | ||||||
| REG | CGAACCGGTC | - | 6771333 | 6771342 | -353 | -362 | |||
| AtREG423 | CGAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG528 | GAACCGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG552 | AACCGGTC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||