PlantPromoterDB promoter information of AT5G20230
Summary of Gene (AT5G20230)
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Overview
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Focused view (chromosome 5: 6825626-6826825)
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Genome position
from initiation codon AT5G20220.2 AT5G20230.1 TSS from cDNA TSS information AT5G20230 5'->3' (+) Promoter sequence AT5G20225
AT5G20225.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G20230
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 10 | + | 6826506 | -120 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 6826507 | -119 |
| TSS clone | A | clone | + | 6826512 | -114 |
| TSS clone | C | clone | + | 6826513 | -113 |
| TSS clone | A | clone | + | 6826515 | -111 |
| TSS clone | T | clone | + | 6826565 | -61 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TCCTATAAATATA | + | 6826472 | 6826484 | -154 | -142 |
| Y Patch | CCTCTCTTT | + | 6826458 | 6826466 | -168 | -160 |
| Y Patch | TCTCTCTT | + | 6826487 | 6826494 | -139 | -132 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AACGACAC | + | 6826404 | 6826411 | -222 | -215 | |||
| AtREG527 | AACGACAC | DREB1Aox | PPDB Motif | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||