PlantPromoterDB promoter information of AT5G20400
Summary of Gene (AT5G20400)
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Overview
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Focused view (chromosome 5: 6891921-6893120)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G20400 5'->3' (+) Promoter sequence AT5G20380.1
AT5G20390.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G20400
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 6894860 | -11 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAAGTCAA | + | 6894793 | 6894800 | -78 | -71 | |||
| AtREG632 | AAAGTCAA | PPDB Motif | PLACE Motif | TTGAC | |||||
| REG | TCGTCGTT | + | 6894803 | 6894810 | -68 | -61 | |||
| AtREG648 | TCGTCGTT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 8 | - | 6892428 | AT5G20380.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | - | 6892408 | AT5G20380.1 |
| TSS clone | T | clone | - | 6892407 | AT5G20380.1 |
| TSS clone | C | clone | - | 6892395 | AT5G20380.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTCTTCTTCCTTCTTC | - | 6892379 | 6892395 | AT5G20380.1 | |
| Y Patch | TCCTCCTCTCTCCCTCTTCTTCTTCTTC | - | 6892429 | 6892456 | AT5G20380.1 | |
| Y Patch | CTCTCTTCTTCCTC | - | 6892464 | 6892477 | AT5G20380.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | GGGACCCAC | - | 6892516 | 6892524 | AT5G20380.1 | ||||
| AtREG615 | GGGACCCA | ABA | PPDB Motif | GGGACCC | PLACE Motif | ||||
| AtREG523 | GGACCCAC | PPDB Motif | GGGACCC | PLACE Motif | |||||