Summary of Gene (AT5G20920.3)
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Overview |
Genome position
from initiation codon AT5G20920.2 TSS from cDNA TSS information AT5G20920.3 5'->3' (-) Promoter sequence AT5G20930.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 20 | - | 7097074 | -413 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 7097114 | -453 |
TSS clone | G | clone | - | 7097109 | -448 |
TSS clone | C | clone | - | 7097083 | -422 |
TSS clone | A | clone | - | 7097074 | -413 |
TSS clone | G | clone | - | 7097073 | -412 |
TSS clone | C | clone | - | 7097065 | -404 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTCTCTC | - | 7097075 | 7097083 | -414 | -422 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | C | clone | + | 7097977 | AT5G20930.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCTTTC | + | 7097930 | 7097937 | AT5G20930.1 | |
Y Patch | TTCCTCCTTCTCTTTCTCT | + | 7097994 | 7098012 | AT5G20930.1 | |
Y Patch | TCTTTCTCT | + | 7098018 | 7098026 | AT5G20930.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GGCCTTAG | + | 7097721 | 7097728 | AT5G20930.1 | ||||
AtREG577 | GGCCTTAG | PPDB Motif |   | PLACE Motif |   |