PlantPromoterDB promoter information of AT5G20920.3
Summary of Gene (AT5G20920.3)
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Overview
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Focused view (chromosome 5: 7099011-7097812)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G20920.3 5'->3' (-) Promoter sequence AT5G20930.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G20920.3
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 20 | - | 7097074 | -413 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 7097114 | -453 |
| TSS clone | G | clone | - | 7097109 | -448 |
| TSS clone | C | clone | - | 7097083 | -422 |
| TSS clone | A | clone | - | 7097074 | -413 |
| TSS clone | G | clone | - | 7097073 | -412 |
| TSS clone | C | clone | - | 7097065 | -404 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCTCTCTC | - | 7097075 | 7097083 | -414 | -422 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | C | clone | + | 7097977 | AT5G20930.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTTTC | + | 7097930 | 7097937 | AT5G20930.1 | |
| Y Patch | TTCCTCCTTCTCTTTCTCT | + | 7097994 | 7098012 | AT5G20930.1 | |
| Y Patch | TCTTTCTCT | + | 7098018 | 7098026 | AT5G20930.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||