PlantPromoterDB promoter information of AT5G20930
Summary of Gene (AT5G20930)
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Overview
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Focused view (chromosome 5: 7089963-7091162)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G20930 5'->3' (+) Promoter sequence AT5G20890.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G20930
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | C | clone | + | 7097977 | -236 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTTTC | + | 7097930 | 7097937 | -283 | -276 |
| Y Patch | TTCCTCCTTCTCTTTCTCT | + | 7097994 | 7098012 | -219 | -201 |
| Y Patch | TCTTTCTCT | + | 7098018 | 7098026 | -195 | -187 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGCCTTAG | + | 7097721 | 7097728 | -492 | -485 | |||
| AtREG577 | GGCCTTAG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 87 | + | 7090791 | AT5G20900.1 |
| TSS peak | A | 8 | - | 7090042 | AT5G20890.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | + | 7090704 | AT5G20900.1 |
| TSS clone | G | clone | + | 7090742 | AT5G20900.1 |
| TSS clone | T | clone | + | 7090750 | AT5G20900.1 |
| TSS clone | G | clone | + | 7090771 | AT5G20900.1 |
| TSS clone | G | clone | + | 7090789 | AT5G20900.1 |
| TSS clone | T | clone | + | 7090790 | AT5G20900.1 |
| TSS clone | A | clone | + | 7090791 | AT5G20900.1 |
| TSS clone | T | clone | - | 7090082 | AT5G20890.1 |
| TSS clone | C | clone | - | 7090081 | AT5G20890.1 |
| TSS clone | A | clone | - | 7090071 | AT5G20890.1 |
| TSS clone | T | clone | - | 7090070 | AT5G20890.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCTTCTTC | - | 7090055 | 7090063 | AT5G20890.1 | |
| Y Patch | CTCTCTCCTCT | - | 7090073 | 7090083 | AT5G20890.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | GAGCCCAATG | + | 7090505 | 7090514 | AT5G20900.1 | ||||
| AtREG533 | GAGCCCAA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG402 | AGCCCAAT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG461 | GCCCAATG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | AACGACACC | + | 7090625 | 7090633 | AT5G20900.1 | ||||
| AtREG527 | AACGACAC | DREB1Aox | PPDB Motif | PLACE Motif | |||||
| AtREG599 | ACGACACC | PPDB Motif | PLACE Motif | ||||||
| REG | AAAGTCAA | + | 7090694 | 7090701 | AT5G20900.1 | ||||
| AtREG632 | AAAGTCAA | PPDB Motif | PLACE Motif | TTGAC | |||||