PlantPromoterDB promoter information of AT5G20930
Summary of Gene (AT5G20930)
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Overview
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Focused view (chromosome 5: 7105863-7107062)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G20930 5'->3' (+) Promoter sequence AT5G20940.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G20930
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | C | clone | + | 7097977 | -236 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTTTC | + | 7097930 | 7097937 | -283 | -276 |
| Y Patch | TTCCTCCTTCTCTTTCTCT | + | 7097994 | 7098012 | -219 | -201 |
| Y Patch | TCTTTCTCT | + | 7098018 | 7098026 | -195 | -187 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGCCTTAG | + | 7097721 | 7097728 | -492 | -485 | |||
| AtREG577 | GGCCTTAG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | A | clone | - | 7106701 | AT5G20940.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CGTCTTCC | - | 7106721 | 7106728 | AT5G20940.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | TCACACGT | - | 7106862 | 7106869 | AT5G20940.1 | ||||
| AtREG588 | TCACACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||