PlantPromoterDB promoter information of AT5G22330.1

Summary of Gene (AT5G22330.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G22330 TAIR NCBI
Gene model	AT5G22330.1
Description	RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1 (RIN1); FUNCTIONS IN: protein binding; INVOLVED IN: defense response to fungus, incompatible interaction, meristem development; LOCATED IN: nucleolus, nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TIP49, C-terminal (InterPro:IPR010339), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: DNA helicase, putative (TAIR:AT5G67630.1); Has 2675 Blast hits to 2634 proteins in 789 species: Archae - 254; Bacteria - 1222; Metazoa - 326; Fungi - 290; Plants - 78; Viruses - 0; Other Eukaryotes - 505 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 7395071-7393872)

`Genome position from initiation codon` `TSS from cDNA TSS information AT5G22330.1 5'->3' (-) Promoter sequence AT5G22340.1 AT5G22340.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G22330.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 8 - 7394194 -123

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	8	-	7394194	-123

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone - 7394183 -112

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	-	7394183	-112

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box CATATAAACT - 7394216 7394225 -145 -154

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`CATATAAACT`	-	7394216	7394225	-145	-154
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TAAAGGCCCATTG - 7394244 7394256 -173 -185

AtREG467 TAAAGGCC      PPDB Motif PLACE Motif

AtREG359 AAAGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353   AAGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354    AGGCCCAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG361     GGCCCATT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG551      GCCCATTG PPDB Motif GCCCA PLACE Motif

REG GTGGGGTG - 7394279 7394286 -208 -215

AtREG618 GTGGGGTG PPDB Motif PLACE Motif

REG ACCCCTTA - 7394378 7394385 -307 -314

AtREG636 ACCCCTTA PPDB Motif ACCCCT PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TAAAGGCCCATTG`		-	7394244	7394256	-173	-185
	AtREG467	`TAAAGGCC`		PPDB Motif		PLACE Motif
	AtREG359	`AAAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG353	`AAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG354	`AGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG361	`GGCCCATT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG551	`GCCCATTG`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`GTGGGGTG`		-	7394279	7394286	-208	-215
	AtREG618	`GTGGGGTG`		PPDB Motif		PLACE Motif
REG	`ACCCCTTA`		-	7394378	7394385	-307	-314
	AtREG636	`ACCCCTTA`		PPDB Motif	`ACCCCT`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 13 + 7394484 AT5G22340.1, AT5G22340.2

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	13	+	7394484	AT5G22340.1, AT5G22340.2

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone + 7394473 AT5G22340.1, AT5G22340.2

TSS clone G clone + 7394485 AT5G22340.1, AT5G22340.2

TSS clone C clone + 7394489 AT5G22340.1, AT5G22340.2

TSS clone T clone + 7394492 AT5G22340.1, AT5G22340.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	+	7394473	AT5G22340.1, AT5G22340.2
TSS clone	`G`	clone	+	7394485	AT5G22340.1, AT5G22340.2
TSS clone	`C`	clone	+	7394489	AT5G22340.1, AT5G22340.2
TSS clone	`T`	clone	+	7394492	AT5G22340.1, AT5G22340.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TTCTCTTC + 7394436 7394443 AT5G22340.1, AT5G22340.2

Y Patch CTTCTTCTTCT + 7394462 7394472 AT5G22340.1, AT5G22340.2

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TTCTCTTC`	+	7394436	7394443	AT5G22340.1, AT5G22340.2
Y Patch	`CTTCTTCTTCT`	+	7394462	7394472	AT5G22340.1, AT5G22340.2
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CAATGGGCCTTTA + 7394244 7394256 AT5G22340.1, AT5G22340.2

AtREG551 CAATGGGC      PPDB Motif GCCCA PLACE Motif

AtREG361 AATGGGCC     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354   ATGGGCCT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353    TGGGCCTT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG359     GGGCCTTT PPDB Motif GCCCA PLACE Motif GGGCC

AtREG467      GGCCTTTA PPDB Motif PLACE Motif

REG CACCCCAC + 7394279 7394286 AT5G22340.1, AT5G22340.2

AtREG618 CACCCCAC PPDB Motif PLACE Motif

REG TAAGGGGT + 7394378 7394385 AT5G22340.1, AT5G22340.2

AtREG636 TAAGGGGT PPDB Motif ACCCCT PLACE Motif