PlantPromoterDB promoter information of AT5G22360.1
Summary of Gene (AT5G22360.1)
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Overview
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Focused view (chromosome 5: 7406654-7405455)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G22360.1 5'->3' (-) Promoter sequence AT5G22370.1
AT5G22370.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G22360.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 15 | - | 7405728 | -74 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 7405765 | -111 |
| TSS clone | A | clone | - | 7405758 | -104 |
| TSS clone | A | clone | - | 7405745 | -91 |
| TSS clone | G | clone | - | 7405739 | -85 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTAAACCGTAAACCGA | - | 7405876 | 7405891 | -222 | -237 | |||
| AtREG519 | GTAAACCGTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG652 | TAAACCGT | PPDB Motif | PLACE Motif | ||||||
| AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | GGCCTAAT | - | 7405898 | 7405905 | -244 | -251 | |||
| AtREG506 | GGCCTAAT | PPDB Motif | PLACE Motif | ||||||
| REG | TTCGGGTCGG | - | 7405929 | 7405938 | -275 | -284 | |||
| AtREG597 | TTCGGGTC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| AtREG383 | TCGGGTCG | PPDB Motif | PLACE Motif | ||||||
| AtREG375 | CGGGTCGG | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||
| REG | CCAAACCGAA | - | 7405947 | 7405956 | -293 | -302 | |||
| AtREG550 | CCAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG568 | AAACCGAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | CGAACCGAACCGGAT | - | 7406009 | 7406023 | -355 | -369 | |||
| AtREG575 | CGAACCGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG556 | AACCGAAC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG451 | ACCGAACC | PPDB Motif | PLACE Motif | ||||||
| AtREG456 | CCGAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG423 | CGAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG579 | GAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG561 | AACCGGAT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||