PlantPromoterDB promoter information of AT5G22880
Summary of Gene (AT5G22880)
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Overview
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Focused view (chromosome 5: 7653567-7652368)
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Genome position
from initiation codon AT5G22890.1 TSS from cDNA TSS information AT5G22880 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G22880
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 34 | - | 7652624 | -57 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 7652626 | -59 |
| TSS clone | G | clone | - | 7652623 | -56 |
| TSS clone | T | clone | - | 7652622 | -55 |
| TSS clone | T | clone | - | 7652620 | -53 |
| TSS clone | A | clone | - | 7652617 | -50 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CTCTTATATAAACA | - | 7652648 | 7652661 | -81 | -94 |
| Y Patch | TCTCTTCCT | - | 7652665 | 7652673 | -98 | -106 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCACGTCACG | - | 7652705 | 7652714 | -138 | -147 | |||
| AtREG419 | CCACGTCA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA | ||||
| AtREG466 | CACGTCAC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG489 | ACGTCACG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT | |||
| REG | CCACGTCAGC | - | 7652902 | 7652911 | -335 | -344 | |||
| AtREG419 | CCACGTCA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA | ||||
| AtREG440 | CACGTCAG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG515 | ACGTCAGC | SA | PPDB Motif | ACGT | PLACE Motif | ACGT | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||