Summary of Gene (AT5G23080.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT5G23080.1 5'->3' (-) Promoter sequence AT5G23090.1
AT5G23090.2 AT5G23090.3 AT5G23090.4 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 8 | - | 7748947 | -58 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | - | 7748928 | -39 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTCTTCTTCTTCTCTCT | - | 7748948 | 7748965 | -59 | -76 |
Y Patch | TCTCCTCC | - | 7748983 | 7748990 | -94 | -101 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GACCCGAACCAGGCCCAGA | - | 7748993 | 7749011 | -104 | -122 | |||
AtREG597 | GACCCGAA | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
AtREG655 | CCGAACCA | PPDB Motif |   | PLACE Motif |   | ||||
AtREG619 | CCAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG370 | CAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG410 | AGGCCCAG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG397 | GGCCCAGA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
REG | CTAATGGGCCGAA | - | 7749016 | 7749028 | -127 | -139 | |||
AtREG558 | CTAATGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG357 | TAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG361 | AATGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG380 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG393 | TGGGCCGA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG427 | GGGCCGAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
REG | CGGCGCGTGAA | - | 7749072 | 7749082 | -183 | -193 | |||
AtREG538 | CGGCGCGT | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
AtREG486 | GGCGCGTG | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
AtREG395 | GCGCGTGA | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
AtREG631 | CGCGTGAA | Drought | PPDB Motif |   | PLACE Motif |   | |||
REG | AAGCGCGTGAA | - | 7749111 | 7749121 | -222 | -232 | |||
AtREG492 | AAGCGCGT | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
AtREG381 | AGCGCGTG | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
AtREG395 | GCGCGTGA | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
AtREG631 | CGCGTGAA | Drought | PPDB Motif |   | PLACE Motif |   | |||
REG | GTCGTTTA | - | 7749140 | 7749147 | -251 | -258 | |||
AtREG565 | GTCGTTTA | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | T | clone | + | 7749070 | AT5G23090.2, AT5G23090.3, AT5G23090.1, AT5G23090.4 |
TSS clone peak | C | clone | + | 7749119 | AT5G23090.2, AT5G23090.3, AT5G23090.1, AT5G23090.4 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TTGCTATA | + | 7749047 | 7749054 | AT5G23090.1, AT5G23090.2, AT5G23090.3, AT5G23090.4 | |
Y Patch | CTTCTTCC | + | 7749124 | 7749131 | AT5G23090.1, AT5G23090.2, AT5G23090.3, AT5G23090.4 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TCTGGGCCTGGTTCGGGTC | + | 7748993 | 7749011 | AT5G23090.1, AT5G23090.2, AT5G23090.3, AT5G23090.4 | ||||
AtREG397 | TCTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG410 | CTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG370 | TGGGCCTG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG619 | GGGCCTGG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG655 | TGGTTCGG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG597 | TTCGGGTC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
REG | TTCGGCCCATTAG | + | 7749016 | 7749028 | AT5G23090.1, AT5G23090.2, AT5G23090.3, AT5G23090.4 | ||||
AtREG427 | TTCGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG393 | TCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG380 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG361 | GGCCCATT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG357 | GCCCATTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG558 | CCCATTAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TTCACGCGCC | + | 7749072 | 7749081 | AT5G23090.1, AT5G23090.2, AT5G23090.3, AT5G23090.4 | ||||
AtREG631 | TTCACGCG | Drought | PPDB Motif |   | PLACE Motif |   | |||
AtREG395 | TCACGCGC | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
AtREG486 | CACGCGCC | PPDB Motif | ACGCGC  | PLACE Motif |   |