Summary of Gene (AT5G23660)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT5G23660 5'->3' (-) Promoter sequence AT5G23665
AT5G23665.1 AT5G23670.1 AT5G23670.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 26 | - | 7973922 | -126 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | - | 7973925 | -129 |
TSS clone | G | clone | - | 7973922 | -126 |
TSS clone | T | clone | - | 7973921 | -125 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CCTCTATAAATA | - | 7973951 | 7973962 | -155 | -166 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGCCTAAACCGAA | - | 7974204 | 7974216 | -408 | -420 | |||
AtREG430 | GGCCTAAA | PPDB Motif |   | PLACE Motif |   | ||||
AtREG511 | CTAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG568 | AAACCGAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 8 | + | 7981691 | AT5G23670.1, AT5G23670.2 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | + | 7981641 | AT5G23670.1, AT5G23670.2 |
TSS clone | G | clone | + | 7981691 | AT5G23670.1, AT5G23670.2 |
TSS clone | G | clone | + | 7981692 | AT5G23670.1, AT5G23670.2 |
TSS clone | A | clone | + | 7981693 | AT5G23670.1, AT5G23670.2 |
TSS clone | G | clone | + | 7981694 | AT5G23670.1, AT5G23670.2 |
TSS clone | G | clone | + | 7981695 | AT5G23670.1, AT5G23670.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ATTTGGGCCTAG | + | 7981532 | 7981543 | AT5G23670.1, AT5G23670.2 | ||||
AtREG421 | ATTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG373 | TTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | TTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG358 | TGGGCCTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG475 | GGGCCTAG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
REG | CAAGGCCCAAG | + | 7981561 | 7981571 | AT5G23670.1, AT5G23670.2 | ||||
AtREG398 | CAAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG353 | AAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | AGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG505 | GGCCCAAG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  |