PlantPromoterDB promoter information of AT5G24020.1
Summary of Gene (AT5G24020.1)
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Overview
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Focused view (chromosome 5: 8115731-8116930)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G24020.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G24020.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 30 | + | 8116680 | -51 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 8116680 | -51 |
| TSS clone | G | clone | + | 8116681 | -50 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CTAAACCGG | + | 8116440 | 8116448 | -291 | -283 | |||
| AtREG511 | CTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG412 | TAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TCGGTTCG | + | 8116480 | 8116487 | -251 | -244 | |||
| AtREG575 | TCGGTTCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | ATAAACCGTTAAA | + | 8116558 | 8116570 | -173 | -161 | |||
| AtREG598 | ATAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG652 | TAAACCGT | PPDB Motif | PLACE Motif | ||||||
| AtREG610 | CCGTTAAA | PPDB Motif | PLACE Motif | YAACKG, CNGTTR | |||||
| REG | TTAAACCGGTTAAG | + | 8116595 | 8116608 | -136 | -123 | |||
| AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG412 | TAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG436 | AAACCGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG503 | ACCGGTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG501 | CCGGTTAA | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG605 | CGGTTAAG | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| REG | AAAACCGGAA | + | 8116622 | 8116631 | -109 | -100 | |||
| AtREG542 | AAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG521 | AAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG534 | AACCGGAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||