Summary of Gene (AT5G24650.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT5G24650.1 5'->3' (+) Promoter sequence AT5G24630.1
AT5G24630.2 AT5G24630.3 AT5G24630.4 AT5G24630.5 AT5G24630.6 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 8 | + | 8437101 | -22 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 8436376 | -747 |
TSS clone | G | clone | + | 8437085 | -38 |
TSS clone | G | clone | + | 8437101 | -22 |
TSS clone | T | clone | + | 8437102 | -21 |
TSS clone | G | clone | + | 8437103 | -20 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCCTCCT | + | 8436334 | 8436341 | -789 | -782 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TAAAAGCCCAATAT | + | 8436104 | 8436117 | -1019 | -1006 | |||
AtREG549 | TAAAAGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG409 | AAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG376 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG402 | AGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG355 | GCCCAATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG509 | CCCAATAT | PPDB Motif |   | PLACE Motif |   | ||||
REG | ATAAAGCCCAAAT | + | 8436138 | 8436150 | -985 | -973 | |||
AtREG601 | ATAAAGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG365 | TAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG376 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG469 | AGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG421 | GCCCAAAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TAATGGGCTTT | + | 8436157 | 8436167 | -966 | -956 | |||
AtREG357 | TAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG372 | AATGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | ATGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG376 | TGGGCTTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
REG | TTAGCCCA | + | 8436190 | 8436197 | -933 | -926 | |||
AtREG571 | TTAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
REG | GCCCAAAC | + | 8436312 | 8436319 | -811 | -804 | |||
AtREG474 | GCCCAAAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TTATGGGCCGAA | + | 8436975 | 8436986 | -148 | -137 | |||
AtREG394 | TTATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG364 | TATGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG380 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG393 | TGGGCCGA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG427 | GGGCCGAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
REG | ATAATGGGC | + | 8437004 | 8437012 | -119 | -111 | |||
AtREG546 | ATAATGGG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG357 | TAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TGAGGCCCAATAA | + | 8437016 | 8437028 | -107 | -95 | |||
AtREG587 | TGAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG447 | GAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | AGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG352 | GGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG355 | GCCCAATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG417 | CCCAATAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GAACCGGC | + | 8437048 | 8437055 | -75 | -68 | |||
AtREG637 | GAACCGGC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |