Summary of Gene (AT5G24780)
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Overview |
Genome position
from initiation codon AT5G24760.2 AT5G24760.3 TSS from cDNA TSS information AT5G24780 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 490 | - | 8508923 | -34 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 8508927 | -38 |
TSS clone | A | clone | - | 8508925 | -36 |
TSS clone | C | clone | - | 8508924 | -35 |
TSS clone | A | clone | - | 8508923 | -34 |
TSS clone | C | clone | - | 8508922 | -33 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | ATTATATAAT | - | 8508951 | 8508960 | -62 | -71 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATAATGGG | - | 8509054 | 8509061 | -165 | -172 | |||
AtREG546 | ATAATGGG | PPDB Motif |   | PLACE Motif |   | ||||
REG | AACGACACG | - | 8509140 | 8509148 | -251 | -259 | |||
AtREG527 | AACGACAC | DREB1Aox | PPDB Motif |   | PLACE Motif |   | |||
AtREG428 | ACGACACG | ABA, DREB1Aox, Ethylene, Drought | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 8 | - | 8497385 | AT5G24760.1, AT5G24760.2, AT5G24760.3 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | - | 8497405 | AT5G24760.1, AT5G24760.2, AT5G24760.3 |
TSS clone | G | clone | - | 8497378 | AT5G24760.1, AT5G24760.2, AT5G24760.3 |
TSS clone | G | clone | - | 8497320 | AT5G24760.1, AT5G24760.2, AT5G24760.3 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTCTTCCTCTTCTTCTTC | - | 8497348 | 8497365 | AT5G24760.1, AT5G24760.2, AT5G24760.3 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GTGGGACC | - | 8497462 | 8497469 | AT5G24760.1, AT5G24760.2, AT5G24760.3 | ||||
AtREG406 | GTGGGACC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
REG | AAAAAGCCCAATAA | - | 8497672 | 8497685 | AT5G24760.1, AT5G24760.2, AT5G24760.3 | ||||
AtREG589 | AAAAAGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG409 | AAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG376 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG402 | AGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG355 | GCCCAATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG417 | CCCAATAA | PPDB Motif | GCCCA  | PLACE Motif |   |