Summary of Gene (AT5G24780)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G24780 5'->3' (-) Promoter sequence AT5G24800.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 490 | - | 8508923 | -34 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 8508927 | -38 |
TSS clone | A | clone | - | 8508925 | -36 |
TSS clone | C | clone | - | 8508924 | -35 |
TSS clone | A | clone | - | 8508923 | -34 |
TSS clone | C | clone | - | 8508922 | -33 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | ATTATATAAT | - | 8508951 | 8508960 | -62 | -71 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATAATGGG | - | 8509054 | 8509061 | -165 | -172 | |||
AtREG546 | ATAATGGG | PPDB Motif |   | PLACE Motif |   | ||||
REG | AACGACACG | - | 8509140 | 8509148 | -251 | -259 | |||
AtREG527 | AACGACAC | DREB1Aox | PPDB Motif |   | PLACE Motif |   | |||
AtREG428 | ACGACACG | ABA, DREB1Aox, Ethylene, Drought | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |