Summary of Gene (AT5G25460.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G25460.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 102 | + | 8863394 | -36 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 8863363 | -67 |
TSS clone | A | clone | + | 8863391 | -39 |
TSS clone | A | clone | + | 8863394 | -36 |
TSS clone | C | clone | + | 8863395 | -35 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CCCTTATAA | + | 8863357 | 8863365 | -73 | -65 |
Y Patch | CTCTCTTT | + | 8863379 | 8863386 | -51 | -44 |
Y Patch | TTCTCTCTTCC | + | 8863413 | 8863423 | -17 | -7 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCCAATTG | + | 8863103 | 8863110 | -327 | -320 | |||
AtREG647 | CCCAATTG | PPDB Motif |   | PLACE Motif |   | ||||
REG | CCCACGTGGG | + | 8863276 | 8863285 | -154 | -145 | |||
AtREG464 | CCCACGTGGG | ABA, Auxin, JA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |